Non-Coding RNA Search

rsin14_m4.y1

Sequence:


               
               CGACGGGCTGCACAGCCTTTCCTACCACCCGGCGCTCAACGCCATTCTGGCCGTCACCAG
TCGCGGGACCATCAAAGTCATCGACGGCACCTCAGGGGCCACCCTGCAGGCCTCGGCGCT
CAGCGGGACGAGAAACTCAGCACCTGCGGTGTATGAGCTGTAGATTCCGTTGGTTTCGTA
CTGAGTGAGACCTTAGGCCGTCTCTGCTTGTTTGACCACATCGAGCGGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGGGCTGCACAGCCTTTCCTACCACCCGGCGCTCAACGCCATTCTGGCCGTCACCAG
TCGCGGGACCATCAAAGTCATCGACGGCACCTCAGGGGCCACCCTGCAGGCCTCGGCGCT
CAGCGGGACGAGAAACTCAGCACCTGCGGTGTATGAGCTGTAGATTCCGTTGGTTTCGTA
CTGAGTGAGACCTTAGGCCGTCTCTGCTTGTTTGACCACATCGAGCGGAAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.559622

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.559622

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF265555, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF265555, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-126, gnl|bosTau2|chr11 (75374922-75374797)
               

               
               1-126, gnl|danRer3|chr17 (19615418-19615242)
               

               
               1-126, gnl|dasNov1|scaffold_74977 (3572-3388)
               

               
               1-126, gnl|fr1|chrUn (260516060-260515890)
               

               
               1-126, gnl|hg17|chr2 (32494034-32494218)
               

               
               1-126, gnl|Hg17|chr2 (32494081-32494206)
               

               
               1-126, gnl|loxAfr1|scaffold_121609 (4285-4101)
               

               
               1-126, gnl|mm7|chr17 (72819153-72819335)
               

               
               1-126, gnl|Mm7|chr17 (72819200-72819325)
               

               
               1-126, gnl|monDom2|scaffold_1 (141730620-141730436)
               

               
               1-126, gnl|oryCun1|scaffold_139179 (1536-1352)
               

               
               1-126, gnl|panTro1|chr12_random (15268035-15268219)
               

               
               1-126, gnl|rheMac2|chr13 (32386422-32386606)
               

               
               1-126, gnl|rn3|chr6 (20851583-20851401)
               

               
               1-126, gnl|tetNig1|chrUn_random (50158294-50158118)
               

               
               1-126, gnl|xenTro1|scaffold_243 (878086-878264)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-126, gnl|bosTau2|chr11 (75374922-75374797)
               

               
               1-126, gnl|danRer3|chr17 (19615418-19615242)
               

               
               1-126, gnl|dasNov1|scaffold_74977 (3572-3388)
               

               
               1-126, gnl|fr1|chrUn (260516060-260515890)
               

               
               1-126, gnl|hg17|chr2 (32494034-32494218)
               

               
               1-126, gnl|Hg17|chr2 (32494081-32494206)
               

               
               1-126, gnl|loxAfr1|scaffold_121609 (4285-4101)
               

               
               1-126, gnl|mm7|chr17 (72819153-72819335)
               

               
               1-126, gnl|Mm7|chr17 (72819200-72819325)
               

               
               1-126, gnl|monDom2|scaffold_1 (141730620-141730436)
               

               
               1-126, gnl|oryCun1|scaffold_139179 (1536-1352)
               

               
               1-126, gnl|panTro1|chr12_random (15268035-15268219)
               

               
               1-126, gnl|rheMac2|chr13 (32386422-32386606)
               

               
               1-126, gnl|rn3|chr6 (20851583-20851401)
               

               
               1-126, gnl|tetNig1|chrUn_random (50158294-50158118)
               

               
               1-126, gnl|xenTro1|scaffold_243 (878086-878264)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	1-126, gnl\|bosTau2\|chr11 (75374922-75374797)
	1-126, gnl\|danRer3\|chr17 (19615418-19615242)
	1-126, gnl\|dasNov1\|scaffold_74977 (3572-3388)
	1-126, gnl\|fr1\|chrUn (260516060-260515890)
	1-126, gnl\|hg17\|chr2 (32494034-32494218)
	1-126, gnl\|Hg17\|chr2 (32494081-32494206)
	1-126, gnl\|loxAfr1\|scaffold_121609 (4285-4101)
	1-126, gnl\|mm7\|chr17 (72819153-72819335)
	1-126, gnl\|Mm7\|chr17 (72819200-72819325)
	1-126, gnl\|monDom2\|scaffold_1 (141730620-141730436)
	1-126, gnl\|oryCun1\|scaffold_139179 (1536-1352)
	1-126, gnl\|panTro1\|chr12_random (15268035-15268219)
	1-126, gnl\|rheMac2\|chr13 (32386422-32386606)
	1-126, gnl\|rn3\|chr6 (20851583-20851401)
	1-126, gnl\|tetNig1\|chrUn_random (50158294-50158118)
	1-126, gnl\|xenTro1\|scaffold_243 (878086-878264)