Non-Coding RNA Search

rsin15_m12.y1

Sequence:


               
               ATTTAGGGGATTGATATTCTTTAAATCATAGCACAGAAAGTAATGAGCTTTCTTTTTCCT
AGGAATAATAATGGTTGGGGTTATCGTTGGTTCAAAGAAGACTGGTATAAATCCTGATAA
TGTTGCTACACCCATTGCTGCTAGTTTTGGGGACCTTATAACTCTTGCCATATTAGCTTG
GATAAGTCAGGGCTTGTACTCCTGTCTTGGTAAGTTGACTTTAAATTAAATATGATGCAT
TATTCAGAGTCTCTTTAAATAAATATTGTTGCAGCAATGTCGTCAATCCATGGTGGCCTT
CATCTGTATTAGAACTGTGGTTGAGACTGATTAGAACAATATCTTCTATTCATTGTATAC
CTACTATGTGTTGTGGTACTCACATTTTTTCTCCTCTTAAAGAGTTTTAAATTCCAAAAG
ATAAGGATTACCTTCTCTAATTTCAGATGAGAAAACTGAAGATCTTAAAGGTTATATATG
TTGTCCATAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAGGGGATTGATATTCTTTAAATCATAGCACAGAAAGTAATGAGCTTTCTTTTTCCT
AGGAATAATAATGGTTGGGGTTATCGTTGGTTCAAAGAAGACTGGTATAAATCCTGATAA
TGTTGCTACACCCATTGCTGCTAGTTTTGGGGACCTTATAACTCTTGCCATATTAGCTTG
GATAAGTCAGGGCTTGTACTCCTGTCTTGGTAAGTTGACTTTAAATTAAATATGATGCAT
TATTCAGAGTCTCTTTAAATAAATATTGTTGCAGCAATGTCGTCAATCCATGGTGGCCTT
CATCTGTATTAGAACTGTGGTTGAGACTGATTAGAACAATATCTTCTATTCATTGTATAC
CTACTATGTGTTGTGGTACTCACATTTTTTCTCCTCTTAAAGAGTTTTAAATTCCAAAAG
ATAAGGATTACCTTCTCTAATTTCAGATGAGAAAACTGAAGATCTTAAAGGTTATATATG
TTGTCCATAACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-475, - strand, RNAz p=0.938682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-475, - strand, RNAz p=0.938682

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-475, gnl|bosTau2|chr5 (64833868-64834344)
               

               
               2-475, gnl|Hg17|chr12 (103782745-103782277)
               

               
               2-475, gnl|Mm7|chr10 (82838868-82838449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-475, gnl|bosTau2|chr5 (64833868-64834344)
               

               
               2-475, gnl|Hg17|chr12 (103782745-103782277)
               

               
               2-475, gnl|Mm7|chr10 (82838868-82838449)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	2-475, gnl\|bosTau2\|chr5 (64833868-64834344)
	2-475, gnl\|Hg17\|chr12 (103782745-103782277)
	2-475, gnl\|Mm7\|chr10 (82838868-82838449)