Non-Coding RNA Search

rsin19_g10.y1

Sequence:


               
               GCCTCTTCGGAATTCGCACGAGGAGAACAAGGAATTTTAGAGTGTGAGAAGCCTCTTCCT
CTTAAAACAGCAATGCAGAAAAAGAGGAGTTACAGCAGTGCATTCAGTCATTCCAGCGCT
GTGCGATTACACGAGAGTGATTCTCTGGCCACCAGCACTGATCCAAAAGAAGACCACAAT
TACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGTGTGTCCTCCCTG
TCATCTGTGGATGAGGTATATGAATTTATCCCAAAGAGTAACCATGTAGGAAGTGATGGC
AGTGAAGGATTTCACAGTGAAGAAGATACAGACGTTGATTATGAAGATGATCCTCTTGGA
GACAGTGGCTATGCCTCACAGGCTTGTGCAGATACCTCTGAAAAGGGGCAGCCAGGCAAG
AAGATTCGAAAACAGTCATGTCAAGAAATTGATGAGGAGCTCAAAGAGGCAGCTGGATCT
TTGCTTCACCTTGCTGGAATTCGTACATGTCTAGGCTCCCTAATAAGTACTGCAAAGACA
CAAAATCAAAAGCAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTTCGGAATTCGCACGAGGAGAACAAGGAATTTTAGAGTGTGAGAAGCCTCTTCCT
CTTAAAACAGCAATGCAGAAAAAGAGGAGTTACAGCAGTGCATTCAGTCATTCCAGCGCT
GTGCGATTACACGAGAGTGATTCTCTGGCCACCAGCACTGATCCAAAAGAAGACCACAAT
TACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGTGTGTCCTCCCTG
TCATCTGTGGATGAGGTATATGAATTTATCCCAAAGAGTAACCATGTAGGAAGTGATGGC
AGTGAAGGATTTCACAGTGAAGAAGATACAGACGTTGATTATGAAGATGATCCTCTTGGA
GACAGTGGCTATGCCTCACAGGCTTGTGCAGATACCTCTGAAAAGGGGCAGCCAGGCAAG
AAGATTCGAAAACAGTCATGTCAAGAAATTGATGAGGAGCTCAAAGAGGCAGCTGGATCT
TTGCTTCACCTTGCTGGAATTCGTACATGTCTAGGCTCCCTAATAAGTACTGCAAAGACA
CAAAATCAAAAGCAGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842091|ref|XP_600009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842091|ref|XP_600009.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-522, + strand, RNAz p=0.822623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-522, + strand, RNAz p=0.822623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-558, gnl|bosTau2|chr11 (24616313-24615799)
               

               
               44-558, gnl|Hg17|chr2 (48513710-48514224)
               

               
               44-558, gnl|Mm7|chr17 (86792065-86792579)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-558, gnl|bosTau2|chr11 (24616313-24615799)
               

               
               44-558, gnl|Hg17|chr2 (48513710-48514224)
               

               
               44-558, gnl|Mm7|chr17 (86792065-86792579)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	44-558, gnl\|bosTau2\|chr11 (24616313-24615799)
	44-558, gnl\|Hg17\|chr2 (48513710-48514224)
	44-558, gnl\|Mm7\|chr17 (86792065-86792579)