Non-Coding RNA Search

rsin26_i24.y1

Sequence:


               
               AAAGAGAACTCTTTGTGTAGGCCTCGTTTATTTACAATGCAAAAGCTCTCCGAATAAATA
TGAAAAAGCTTATCAGCTGAGCAAATATGTATTCACTTAATACATTATGTCTTCGGTGGT
AGATTAAATCAAACACAAAATACTCTGCAAATAAGACGTGTAGAACCCGCGGCATTAAAT
ATAGCGATTTAAGATGGTATTCACAAAATGCAAAACGTCGTAATCGCTTTGTTGTCACGG
GTGGGACGACCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGAACTCTTTGTGTAGGCCTCGTTTATTTACAATGCAAAAGCTCTCCGAATAAATA
TGAAAAAGCTTATCAGCTGAGCAAATATGTATTCACTTAATACATTATGTCTTCGGTGGT
AGATTAAATCAAACACAAAATACTCTGCAAATAAGACGTGTAGAACCCGCGGCATTAAAT
ATAGCGATTTAAGATGGTATTCACAAAATGCAAAACGTCGTAATCGCTTTGTTGTCACGG
GTGGGACGACCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, - strand, RNAz p=0.532175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.532175

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-259, gnl|bosTau2|chr19 (45059158-45059415)
               

               
               1-259, gnl|canFam2|chr9 (3713423-3713178)
               

               
               1-259, gnl|dasNov1|scaffold_53116 (9801-9561)
               

               
               1-259, gnl|echTel1|scaffold_294805 (5349-5115)
               

               
               1-259, gnl|hg17|chr17 (76986136-76986385)
               

               
               1-259, gnl|Hg17|chr17 (76986227-76986485)
               

               
               1-259, gnl|mm7|chr11 (120344137-120344381)
               

               
               1-259, gnl|Mm7|chr11 (120344225-120344481)
               

               
               1-259, gnl|monDom2|scaffold_18 (13645532-13645784)
               

               
               1-259, gnl|panTro1|chr19_random (56098477-56098725)
               

               
               1-259, gnl|rheMac2|chr16 (76855569-76855818)
               

               
               1-259, gnl|rn3|chr10 (109671254-109671496)
               

               
               1-259, gnl|xenTro1|scaffold_722 (191935-192145)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr19 (45059158-45059415)
               

               
               1-259, gnl|canFam2|chr9 (3713423-3713178)
               

               
               1-259, gnl|dasNov1|scaffold_53116 (9801-9561)
               

               
               1-259, gnl|echTel1|scaffold_294805 (5349-5115)
               

               
               1-259, gnl|hg17|chr17 (76986136-76986385)
               

               
               1-259, gnl|Hg17|chr17 (76986227-76986485)
               

               
               1-259, gnl|mm7|chr11 (120344137-120344381)
               

               
               1-259, gnl|Mm7|chr11 (120344225-120344481)
               

               
               1-259, gnl|monDom2|scaffold_18 (13645532-13645784)
               

               
               1-259, gnl|panTro1|chr19_random (56098477-56098725)
               

               
               1-259, gnl|rheMac2|chr16 (76855569-76855818)
               

               
               1-259, gnl|rn3|chr10 (109671254-109671496)
               

               
               1-259, gnl|xenTro1|scaffold_722 (191935-192145)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	1-259, gnl\|bosTau2\|chr19 (45059158-45059415)
	1-259, gnl\|canFam2\|chr9 (3713423-3713178)
	1-259, gnl\|dasNov1\|scaffold_53116 (9801-9561)
	1-259, gnl\|echTel1\|scaffold_294805 (5349-5115)
	1-259, gnl\|hg17\|chr17 (76986136-76986385)
	1-259, gnl\|Hg17\|chr17 (76986227-76986485)
	1-259, gnl\|mm7\|chr11 (120344137-120344381)
	1-259, gnl\|Mm7\|chr11 (120344225-120344481)
	1-259, gnl\|monDom2\|scaffold_18 (13645532-13645784)
	1-259, gnl\|panTro1\|chr19_random (56098477-56098725)
	1-259, gnl\|rheMac2\|chr16 (76855569-76855818)
	1-259, gnl\|rn3\|chr10 (109671254-109671496)
	1-259, gnl\|xenTro1\|scaffold_722 (191935-192145)