Non-Coding RNA Search

rsin29_e4.y1

Sequence:


               
               TGAAGATCTCTATGAGCTTTTGAAACTTGTTAAGGAAAAAGAAGAAGTAGAGGGAATATC
AGTAGGAGCTATACTCTCTGACTACCAGCGTGTTCGAGTAGAAAATGTGTGTAAAAGGCT
TAATCTCCAGCCTTTAGCTTACCTTTGGCAGAGAAACCAGGAAGATTTGCTCCGAGAGAT
GATATCATCTAACATTCAAGCAATCATCATCAAAGTAGCAGCTCTAGGTTTAGATCCAGA
TAAGCATCTTGGAAAAACCCTGGATCAAATGGAGCCTTATCTCTTAGAGCTTTCTAAGAA
GTATGGAGTCCATGTTTGTGGAGAAGGTGGAGAGTATGAAACATTCACTTTGGATTGCCC
TCTATTTAAGAAGAAAATAATTGTGGATTCATCAGAAGTAGTCATACATTCAGCTGATGC
ATTTGCACCTGTGGCTTACCTACGCTTTTTAGAATTGCACTTGGAGGACAAGGTGTCCCC
AGTACCTGACAACTGCAGAACATCTAATTATATACATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGATCTCTATGAGCTTTTGAAACTTGTTAAGGAAAAAGAAGAAGTAGAGGGAATATC
AGTAGGAGCTATACTCTCTGACTACCAGCGTGTTCGAGTAGAAAATGTGTGTAAAAGGCT
TAATCTCCAGCCTTTAGCTTACCTTTGGCAGAGAAACCAGGAAGATTTGCTCCGAGAGAT
GATATCATCTAACATTCAAGCAATCATCATCAAAGTAGCAGCTCTAGGTTTAGATCCAGA
TAAGCATCTTGGAAAAACCCTGGATCAAATGGAGCCTTATCTCTTAGAGCTTTCTAAGAA
GTATGGAGTCCATGTTTGTGGAGAAGGTGGAGAGTATGAAACATTCACTTTGGATTGCCC
TCTATTTAAGAAGAAAATAATTGTGGATTCATCAGAAGTAGTCATACATTCAGCTGATGC
ATTTGCACCTGTGGCTTACCTACGCTTTTTAGAATTGCACTTGGAGGACAAGGTGTCCCC
AGTACCTGACAACTGCAGAACATCTAATTATATACATAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57108375|ref|XP_544605.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57108375|ref|XP_544605.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               109-240, gnl|bosTau2|chr10 (19865440-19865309)
               

               
               109-240, gnl|canFam2|chr30 (6037582-6037694)
               

               
               109-240, gnl|danRer3|chr9 (610226-610348)
               

               
               109-240, gnl|echTel1|scaffold_87311 (5974-5860)
               

               
               109-240, gnl|galGal2|chr5 (28899599-28899485)
               

               
               109-240, gnl|hg17|chr15 (33530148-33530262)
               

               
               109-240, gnl|Hg17|chr15 (33530296-33530165)
               

               
               109-240, gnl|loxAfr1|scaffold_22174 (39432-39545)
               

               
               109-240, gnl|mm7|chr2 (114308730-114308844)
               

               
               109-240, gnl|Mm7|chr2 (114308878-114308747)
               

               
               109-240, gnl|monDom2|scaffold_12 (8825233-8825118)
               

               
               109-240, gnl|oryCun1|scaffold_110329 (120-4)
               

               
               109-240, gnl|panTro1|chr16 (33320944-33321058)
               

               
               109-240, gnl|rheMac2|chr7 (13800744-13800858)
               

               
               109-240, gnl|tetNig1|chr10 (7831240-7831115)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-240, gnl|bosTau2|chr10 (19865440-19865309)
               

               
               109-240, gnl|canFam2|chr30 (6037582-6037694)
               

               
               109-240, gnl|danRer3|chr9 (610226-610348)
               

               
               109-240, gnl|echTel1|scaffold_87311 (5974-5860)
               

               
               109-240, gnl|galGal2|chr5 (28899599-28899485)
               

               
               109-240, gnl|hg17|chr15 (33530148-33530262)
               

               
               109-240, gnl|Hg17|chr15 (33530296-33530165)
               

               
               109-240, gnl|loxAfr1|scaffold_22174 (39432-39545)
               

               
               109-240, gnl|mm7|chr2 (114308730-114308844)
               

               
               109-240, gnl|Mm7|chr2 (114308878-114308747)
               

               
               109-240, gnl|monDom2|scaffold_12 (8825233-8825118)
               

               
               109-240, gnl|oryCun1|scaffold_110329 (120-4)
               

               
               109-240, gnl|panTro1|chr16 (33320944-33321058)
               

               
               109-240, gnl|rheMac2|chr7 (13800744-13800858)
               

               
               109-240, gnl|tetNig1|chr10 (7831240-7831115)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	109-240, gnl\|bosTau2\|chr10 (19865440-19865309)
	109-240, gnl\|canFam2\|chr30 (6037582-6037694)
	109-240, gnl\|danRer3\|chr9 (610226-610348)
	109-240, gnl\|echTel1\|scaffold_87311 (5974-5860)
	109-240, gnl\|galGal2\|chr5 (28899599-28899485)
	109-240, gnl\|hg17\|chr15 (33530148-33530262)
	109-240, gnl\|Hg17\|chr15 (33530296-33530165)
	109-240, gnl\|loxAfr1\|scaffold_22174 (39432-39545)
	109-240, gnl\|mm7\|chr2 (114308730-114308844)
	109-240, gnl\|Mm7\|chr2 (114308878-114308747)
	109-240, gnl\|monDom2\|scaffold_12 (8825233-8825118)
	109-240, gnl\|oryCun1\|scaffold_110329 (120-4)
	109-240, gnl\|panTro1\|chr16 (33320944-33321058)
	109-240, gnl\|rheMac2\|chr7 (13800744-13800858)
	109-240, gnl\|tetNig1\|chr10 (7831240-7831115)