Non-Coding RNA Search

rsin35_c14.y1

Sequence:


               
               GTGACCTTAGCATGGGTTTCTGTCATTGTAGGAGAACATTTCTGGTCAGTGGCCACTGTT
TACAGTTTGTTAAACTCAACACAAATCTACAAAAAATTCATGAGTAATTGTGAACACAGT
ATTTGAATAGATGTTTAATAAATATGCATTAAAAATCTAATTACAGTAATGAAGTTTACA
GCTGAAATTTTAATCCAGCCCTTTAGAAATATTAAACGTGCTTTTCCTGATTGTGCATTT
TTCTCACAGCAGTTGGGTAAACATTTTAAACTGGAAATCTAAATTCCTTATATAATTTTG
ATTTCATTTAACTGAGTGTGGTTCTTTTTGGCAACGATCTTTTTTCTCTTTGTGAAGAAG
TGAAGCTTCTTTTATTCCATAACTGTTACTTAGAAGAATTTTGATCACTTCTGCCTTAGG
ACTGATGAATACATGGGATACCATATGAATAATAAAATATGACCTGAGGGTGGGTTAAGG
ATCTGGCGTTACTGTGAGCTGTGGTGCAGGTTGCGGATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCTTAGCATGGGTTTCTGTCATTGTAGGAGAACATTTCTGGTCAGTGGCCACTGTT
TACAGTTTGTTAAACTCAACACAAATCTACAAAAAATTCATGAGTAATTGTGAACACAGT
ATTTGAATAGATGTTTAATAAATATGCATTAAAAATCTAATTACAGTAATGAAGTTTACA
GCTGAAATTTTAATCCAGCCCTTTAGAAATATTAAACGTGCTTTTCCTGATTGTGCATTT
TTCTCACAGCAGTTGGGTAAACATTTTAAACTGGAAATCTAAATTCCTTATATAATTTTG
ATTTCATTTAACTGAGTGTGGTTCTTTTTGGCAACGATCTTTTTTCTCTTTGTGAAGAAG
TGAAGCTTCTTTTATTCCATAACTGTTACTTAGAAGAATTTTGATCACTTCTGCCTTAGG
ACTGATGAATACATGGGATACCATATGAATAATAAAATATGACCTGAGGGTGGGTTAAGG
ATCTGGCGTTACTGTGAGCTGTGGTGCAGGTTGCGGATGTG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-466, gnl|bosTau2|chr11 (84754369-84753904)
               

               
               2-466, gnl|canFam2|chr12 (68351259-68351902)
               

               
               2-466, gnl|echTel1|scaffold_55543 (924-291)
               

               
               2-466, gnl|hg17|chr6 (108732313-108732954)
               

               
               2-466, gnl|Hg17|chr6 (108732322-108732785)
               

               
               2-466, gnl|loxAfr1|scaffold_30944 (6100-6738)
               

               
               2-466, gnl|mm7|chr10 (42280870-42280281)
               

               
               2-466, gnl|Mm7|chr10 (42280859-42280417)
               

               
               2-466, gnl|monDom2|scaffold_0 (112266436-112265814)
               

               
               2-466, gnl|oryCun1|scaffold_213415 (13721-13094)
               

               
               2-466, gnl|panTro1|chr5 (111033350-111033991)
               

               
               2-466, gnl|rheMac2|chr4 (155577225-155576591)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-466, gnl|bosTau2|chr11 (84754369-84753904)
               

               
               2-466, gnl|canFam2|chr12 (68351259-68351902)
               

               
               2-466, gnl|echTel1|scaffold_55543 (924-291)
               

               
               2-466, gnl|hg17|chr6 (108732313-108732954)
               

               
               2-466, gnl|Hg17|chr6 (108732322-108732785)
               

               
               2-466, gnl|loxAfr1|scaffold_30944 (6100-6738)
               

               
               2-466, gnl|mm7|chr10 (42280870-42280281)
               

               
               2-466, gnl|Mm7|chr10 (42280859-42280417)
               

               
               2-466, gnl|monDom2|scaffold_0 (112266436-112265814)
               

               
               2-466, gnl|oryCun1|scaffold_213415 (13721-13094)
               

               
               2-466, gnl|panTro1|chr5 (111033350-111033991)
               

               
               2-466, gnl|rheMac2|chr4 (155577225-155576591)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sin (0.174948)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	2-466, gnl\|bosTau2\|chr11 (84754369-84753904)
	2-466, gnl\|canFam2\|chr12 (68351259-68351902)
	2-466, gnl\|echTel1\|scaffold_55543 (924-291)
	2-466, gnl\|hg17\|chr6 (108732313-108732954)
	2-466, gnl\|Hg17\|chr6 (108732322-108732785)
	2-466, gnl\|loxAfr1\|scaffold_30944 (6100-6738)
	2-466, gnl\|mm7\|chr10 (42280870-42280281)
	2-466, gnl\|Mm7\|chr10 (42280859-42280417)
	2-466, gnl\|monDom2\|scaffold_0 (112266436-112265814)
	2-466, gnl\|oryCun1\|scaffold_213415 (13721-13094)
	2-466, gnl\|panTro1\|chr5 (111033350-111033991)
	2-466, gnl\|rheMac2\|chr4 (155577225-155576591)