Non-Coding RNA Search

rski0109_o21.y1

Sequence:


               
               GGAACGACAGCTGCTCTGCATCGCTCGGGCCCTCCTCCGCAGCTCCAAGATCATCCTTAT
TGATGAGGCCACAGCCTCCATCGACTTGGAGACTGATGCCCTGATTCAGCACACAATCCG
TGAATGGTTCCAGGGCTGCACAGTGCTGGTCATTGCACACCGTGTGTCCACTGTCCTCAG
CTGTGACCGTATCCTGGTCATGGGCAACGGGAAGGTGGTGGAGTTTGATAGGCCTGAGGT
CCTGCAGAAGAAGCCAGGGTCTGTGTTCGCAGCCCTGCTGGCAACAGCCAATTTATCACC
GAGCTGAGGATGGGGACCCCATGAAGGCGGGTGGCTGAACCCATCATGGTGCACTGGAGT
GTGGTGGGGGGCTGCGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGACAGCTGCTCTGCATCGCTCGGGCCCTCCTCCGCAGCTCCAAGATCATCCTTAT
TGATGAGGCCACAGCCTCCATCGACTTGGAGACTGATGCCCTGATTCAGCACACAATCCG
TGAATGGTTCCAGGGCTGCACAGTGCTGGTCATTGCACACCGTGTGTCCACTGTCCTCAG
CTGTGACCGTATCCTGGTCATGGGCAACGGGAAGGTGGTGGAGTTTGATAGGCCTGAGGT
CCTGCAGAAGAAGCCAGGGTCTGTGTTCGCAGCCCTGCTGGCAACAGCCAATTTATCACC
GAGCTGAGGATGGGGACCCCATGAAGGCGGGTGGCTGAACCCATCATGGTGCACTGGAGT
GTGGTGGGGGGCTGCGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6911200|gb|AAF31427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6911200|gb|AAF31427.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               31-217, + strand, RNAz p=0.573831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               31-217, + strand, RNAz p=0.573831

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               31-217, gnl|bosTau2|chr18 (17650600-17650786)
               

               
               31-217, gnl|canFam2|chr2 (69764147-69763962)
               

               
               31-217, gnl|danRer3|chr7 (28342587-28342767)
               

               
               31-217, gnl|dasNov1|scaffold_11869 (5616-5801)
               

               
               31-217, gnl|echTel1|scaffold_275836 (6712-6897)
               

               
               31-217, gnl|fr1|chrUn (293390738-293390564)
               

               
               31-217, gnl|hg17|chr16 (46758905-46759090)
               

               
               31-217, gnl|Hg17|chr16 (46759091-46758905)
               

               
               31-217, gnl|loxAfr1|scaffold_105092 (1214-1021)
               

               
               31-217, gnl|mm7|chr8 (85095961-85096146)
               

               
               31-217, gnl|Mm7|chr8 (85096143-85095961)
               

               
               31-217, gnl|monDom2|scaffold_35 (12410861-12411039)
               

               
               31-217, gnl|oryCun1|scaffold_200975 (37101-37281)
               

               
               31-217, gnl|panTro1|chrUn_random (10563934-10564119)
               

               
               31-217, gnl|rheMac2|chr20 (46357044-46357229)
               

               
               31-217, gnl|rn3|chr19 (21967032-21966847)
               

               
               31-217, gnl|tetNig1|chrUn_random (136290652-136290482)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-217, gnl|bosTau2|chr18 (17650600-17650786)
               

               
               31-217, gnl|canFam2|chr2 (69764147-69763962)
               

               
               31-217, gnl|danRer3|chr7 (28342587-28342767)
               

               
               31-217, gnl|dasNov1|scaffold_11869 (5616-5801)
               

               
               31-217, gnl|echTel1|scaffold_275836 (6712-6897)
               

               
               31-217, gnl|fr1|chrUn (293390738-293390564)
               

               
               31-217, gnl|hg17|chr16 (46758905-46759090)
               

               
               31-217, gnl|Hg17|chr16 (46759091-46758905)
               

               
               31-217, gnl|loxAfr1|scaffold_105092 (1214-1021)
               

               
               31-217, gnl|mm7|chr8 (85095961-85096146)
               

               
               31-217, gnl|Mm7|chr8 (85096143-85095961)
               

               
               31-217, gnl|monDom2|scaffold_35 (12410861-12411039)
               

               
               31-217, gnl|oryCun1|scaffold_200975 (37101-37281)
               

               
               31-217, gnl|panTro1|chrUn_random (10563934-10564119)
               

               
               31-217, gnl|rheMac2|chr20 (46357044-46357229)
               

               
               31-217, gnl|rn3|chr19 (21967032-21966847)
               

               
               31-217, gnl|tetNig1|chrUn_random (136290652-136290482)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	31-217, gnl\|bosTau2\|chr18 (17650600-17650786)
	31-217, gnl\|canFam2\|chr2 (69764147-69763962)
	31-217, gnl\|danRer3\|chr7 (28342587-28342767)
	31-217, gnl\|dasNov1\|scaffold_11869 (5616-5801)
	31-217, gnl\|echTel1\|scaffold_275836 (6712-6897)
	31-217, gnl\|fr1\|chrUn (293390738-293390564)
	31-217, gnl\|hg17\|chr16 (46758905-46759090)
	31-217, gnl\|Hg17\|chr16 (46759091-46758905)
	31-217, gnl\|loxAfr1\|scaffold_105092 (1214-1021)
	31-217, gnl\|mm7\|chr8 (85095961-85096146)
	31-217, gnl\|Mm7\|chr8 (85096143-85095961)
	31-217, gnl\|monDom2\|scaffold_35 (12410861-12411039)
	31-217, gnl\|oryCun1\|scaffold_200975 (37101-37281)
	31-217, gnl\|panTro1\|chrUn_random (10563934-10564119)
	31-217, gnl\|rheMac2\|chr20 (46357044-46357229)
	31-217, gnl\|rn3\|chr19 (21967032-21966847)
	31-217, gnl\|tetNig1\|chrUn_random (136290652-136290482)