Non-Coding RNA Search

rski0115_d12.y1

Sequence:


               
               TTTATTAGCTATGAGCTATAACGTCATTGTGAAATTAAGAAGAAGGGATATCCTTAGAGA
CTTTGAAGAGTTAAGCCCTTGGAGGTTTTGGAAAATAATGAGTTTATAATAGCTAATATT
CTAAATCCTACTGATGTCCAGGGAGGCTTGAGGAGAAACTGATTCAGAACATTTGGAACC
ATTAAAGTTTGGGATTTTATCATTTGATTGTTGGTTGGTTTTGGAAGGGTTTGTTGAACT
CCTTTTGGCACAGAACTTTTCTCACATTGAAGAACCATGGCTCTTTGCTATTTCCCGTTA
AAGTCAGTTTCTTTGGTGTATGCTCAGGCCTTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTAGCTATGAGCTATAACGTCATTGTGAAATTAAGAAGAAGGGATATCCTTAGAGA
CTTTGAAGAGTTAAGCCCTTGGAGGTTTTGGAAAATAATGAGTTTATAATAGCTAATATT
CTAAATCCTACTGATGTCCAGGGAGGCTTGAGGAGAAACTGATTCAGAACATTTGGAACC
ATTAAAGTTTGGGATTTTATCATTTGATTGTTGGTTGGTTTTGGAAGGGTTTGTTGAACT
CCTTTTGGCACAGAACTTTTCTCACATTGAAGAACCATGGCTCTTTGCTATTTCCCGTTA
AAGTCAGTTTCTTTGGTGTATGCTCAGGCCTTCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-321, + strand, RNAz p=0.698123

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-321, + strand, RNAz p=0.698123

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-336, gnl|bosTau2|chr10 (30427428-30427749)
               

               
               2-336, gnl|canFam2|chr30 (31947937-31948178)
               

               
               2-336, gnl|echTel1|scaffold_34185 (530-287)
               

               
               2-336, gnl|hg17|chr15 (62588683-62588931)
               

               
               2-336, gnl|Hg17|chr15 (62588690-62589021)
               

               
               2-336, gnl|loxAfr1|scaffold_1222 (16857-16612)
               

               
               2-336, gnl|mm7|chr9 (65814545-65814303)
               

               
               2-336, gnl|Mm7|chr9 (65814537-65814221)
               

               
               2-336, gnl|panTro1|chr16 (63055088-63055336)
               

               
               2-336, gnl|rheMac2|chr7 (42954924-42955168)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-336, gnl|bosTau2|chr10 (30427428-30427749)
               

               
               2-336, gnl|canFam2|chr30 (31947937-31948178)
               

               
               2-336, gnl|echTel1|scaffold_34185 (530-287)
               

               
               2-336, gnl|hg17|chr15 (62588683-62588931)
               

               
               2-336, gnl|Hg17|chr15 (62588690-62589021)
               

               
               2-336, gnl|loxAfr1|scaffold_1222 (16857-16612)
               

               
               2-336, gnl|mm7|chr9 (65814545-65814303)
               

               
               2-336, gnl|Mm7|chr9 (65814537-65814221)
               

               
               2-336, gnl|panTro1|chr16 (63055088-63055336)
               

               
               2-336, gnl|rheMac2|chr7 (42954924-42955168)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	2-336, gnl\|bosTau2\|chr10 (30427428-30427749)
	2-336, gnl\|canFam2\|chr30 (31947937-31948178)
	2-336, gnl\|echTel1\|scaffold_34185 (530-287)
	2-336, gnl\|hg17\|chr15 (62588683-62588931)
	2-336, gnl\|Hg17\|chr15 (62588690-62589021)
	2-336, gnl\|loxAfr1\|scaffold_1222 (16857-16612)
	2-336, gnl\|mm7\|chr9 (65814545-65814303)
	2-336, gnl\|Mm7\|chr9 (65814537-65814221)
	2-336, gnl\|panTro1\|chr16 (63055088-63055336)
	2-336, gnl\|rheMac2\|chr7 (42954924-42955168)