Non-Coding RNA Search

rski0117_p22.y1

Sequence:


               
               GGGAGTTTTTGATGAAAGAGAAGAGAGGTGTTGTGAAATGTTGTAAATAGAATTCTGCCT
AAATAATACACTCCCTGCTTATTCAATAATATACTTCACACTTGAGATGAGCCATCTAGA
AGCCTTTCACTATCATGTCTCACTAAGCAGCGAATTTAGGAAAGCGTTTCCATTTTTGTG
ACTTTTCATAACAAAGCCTCTACAAACGTGTTGCATCAGTTTGACCTTGGAGAGCTATGG
ACAGAGGTCGTATGGGGACCTTTTGTTAGCTATCAGTGCAGTTTTGGCAGATCCGAAAAA
CAAGAAGAAAGAAGTGCAGAACTGAAAGAGTGAGAAAAGCATATTTCACTTCAGTGTGGT
TTGACAAATGGAAAGCCCCTTTTTGCAGTCATGAGGTCTAGTTATAAAGAAGGATGACCG
GTCATTCATCCTCTTACAGGGCAGATTTCCTGTCTACTTATGGTTTGAGTAATTTTCTTT
TTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTTTTTGATGAAAGAGAAGAGAGGTGTTGTGAAATGTTGTAAATAGAATTCTGCCT
AAATAATACACTCCCTGCTTATTCAATAATATACTTCACACTTGAGATGAGCCATCTAGA
AGCCTTTCACTATCATGTCTCACTAAGCAGCGAATTTAGGAAAGCGTTTCCATTTTTGTG
ACTTTTCATAACAAAGCCTCTACAAACGTGTTGCATCAGTTTGACCTTGGAGAGCTATGG
ACAGAGGTCGTATGGGGACCTTTTGTTAGCTATCAGTGCAGTTTTGGCAGATCCGAAAAA
CAAGAAGAAAGAAGTGCAGAACTGAAAGAGTGAGAAAAGCATATTTCACTTCAGTGTGGT
TTGACAAATGGAAAGCCCCTTTTTGCAGTCATGAGGTCTAGTTATAAAGAAGGATGACCG
GTCATTCATCCTCTTACAGGGCAGATTTCCTGTCTACTTATGGTTTGAGTAATTTTCTTT
TTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-425, + strand, RNAz p=0.804447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-425, + strand, RNAz p=0.804447

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-484, gnl|bosTau2|chr24 (34995054-34995545)
               

               
               3-484, gnl|canFam2|chr1 (23383871-23383279)
               

               
               3-484, gnl|dasNov1|scaffold_203 (81049-81626)
               

               
               3-484, gnl|echTel1|scaffold_301160 (35187-35779)
               

               
               3-484, gnl|hg17|chr18 (51086159-51086746)
               

               
               3-484, gnl|Hg17|chr18 (51086931-51086444)
               

               
               3-484, gnl|loxAfr1|scaffold_8870 (12537-13100)
               

               
               3-484, gnl|mm7|chr18 (70037363-70036795)
               

               
               3-484, gnl|Mm7|chr18 (70036619-70037094)
               

               
               3-484, gnl|monDom2|scaffold_20 (47999117-47998482)
               

               
               3-484, gnl|panTro1|chr17 (47715235-47715822)
               

               
               3-484, gnl|rheMac2|chr18 (48541450-48542036)
               

               
               3-484, gnl|rn3|chr18 (66393861-66393301)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-484, gnl|bosTau2|chr24 (34995054-34995545)
               

               
               3-484, gnl|canFam2|chr1 (23383871-23383279)
               

               
               3-484, gnl|dasNov1|scaffold_203 (81049-81626)
               

               
               3-484, gnl|echTel1|scaffold_301160 (35187-35779)
               

               
               3-484, gnl|hg17|chr18 (51086159-51086746)
               

               
               3-484, gnl|Hg17|chr18 (51086931-51086444)
               

               
               3-484, gnl|loxAfr1|scaffold_8870 (12537-13100)
               

               
               3-484, gnl|mm7|chr18 (70037363-70036795)
               

               
               3-484, gnl|Mm7|chr18 (70036619-70037094)
               

               
               3-484, gnl|monDom2|scaffold_20 (47999117-47998482)
               

               
               3-484, gnl|panTro1|chr17 (47715235-47715822)
               

               
               3-484, gnl|rheMac2|chr18 (48541450-48542036)
               

               
               3-484, gnl|rn3|chr18 (66393861-66393301)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	3-484, gnl\|bosTau2\|chr24 (34995054-34995545)
	3-484, gnl\|canFam2\|chr1 (23383871-23383279)
	3-484, gnl\|dasNov1\|scaffold_203 (81049-81626)
	3-484, gnl\|echTel1\|scaffold_301160 (35187-35779)
	3-484, gnl\|hg17\|chr18 (51086159-51086746)
	3-484, gnl\|Hg17\|chr18 (51086931-51086444)
	3-484, gnl\|loxAfr1\|scaffold_8870 (12537-13100)
	3-484, gnl\|mm7\|chr18 (70037363-70036795)
	3-484, gnl\|Mm7\|chr18 (70036619-70037094)
	3-484, gnl\|monDom2\|scaffold_20 (47999117-47998482)
	3-484, gnl\|panTro1\|chr17 (47715235-47715822)
	3-484, gnl\|rheMac2\|chr18 (48541450-48542036)
	3-484, gnl\|rn3\|chr18 (66393861-66393301)