Non-Coding RNA Search

rski0118_e20.y1

Sequence:


               
               GAAGGAGGAAGTAGTCCTTTGATATGTCCAGACTCTAGTGCAAGACCAAGGGTTAAGTCT
TCGTACAGCATGGAGAATGCAAATAAATGGTCGTGTCACATGTGCACATATTTGAACTGG
CCAAGAGCAATCAGATGGACTCAGTGCTTATCCCAGCGTAGGACCAGGAGTCCCACAGAA
TCTCCTCAATCCTCAGGATCTGGCTCAAGACCAGTTGCTTTTTCTGTTGATCCTTGTGAG
GAATACAATGATAGAAATAAACTGAACACAAGGACCCAGCATTGGACTTGTTCTATTTGC
ACGTATGAAAACTGGGCCAAAGCAAAAAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAGGAAGTAGTCCTTTGATATGTCCAGACTCTAGTGCAAGACCAAGGGTTAAGTCT
TCGTACAGCATGGAGAATGCAAATAAATGGTCGTGTCACATGTGCACATATTTGAACTGG
CCAAGAGCAATCAGATGGACTCAGTGCTTATCCCAGCGTAGGACCAGGAGTCCCACAGAA
TCTCCTCAATCCTCAGGATCTGGCTCAAGACCAGTTGCTTTTTCTGTTGATCCTTGTGAG
GAATACAATGATAGAAATAAACTGAACACAAGGACCCAGCATTGGACTTGTTCTATTTGC
ACGTATGAAAACTGGGCCAAAGCAAAAAAATGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47187367|emb|CAF92296.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47187367|emb|CAF92296.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               160-279, - strand, RNAz p=0.691117

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.691117

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-332, gnl|bosTau2|chr26 (31106299-31106630)
               

               
               1-332, gnl|canFam2|chr28 (37223274-37223944)
               

               
               1-332, gnl|danRer3|chr17 (5387324-5387991)
               

               
               1-332, gnl|echTel1|scaffold_324958 (76979-77652)
               

               
               1-332, gnl|fr1|chrUn (25546921-25547612)
               

               
               1-332, gnl|galGal2|chr6 (31238553-31237880)
               

               
               1-332, gnl|hg17|chr10 (126621213-126621886)
               

               
               1-332, gnl|Hg17|chr10 (126621227-126621558)
               

               
               1-332, gnl|loxAfr1|scaffold_5324 (4742-5415)
               

               
               1-332, gnl|Mm7|chr7 (129354690-129355021)
               

               
               1-332, gnl|monDom2|scaffold_144 (285001-285676)
               

               
               1-332, gnl|oryCun1|scaffold_161789 (7826-8500)
               

               
               1-332, gnl|panTro1|chr8 (129132047-129132720)
               

               
               1-332, gnl|rheMac2|chr9 (124542037-124542710)
               

               
               1-332, gnl|rn3|chr1 (192572066-192572737)
               

               
               1-332, gnl|tetNig1|chr17 (7491862-7491069)
               

               
               1-332, gnl|xenTro1|scaffold_97 (1566291-1566942)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr26 (31106299-31106630)
               

               
               1-332, gnl|canFam2|chr28 (37223274-37223944)
               

               
               1-332, gnl|danRer3|chr17 (5387324-5387991)
               

               
               1-332, gnl|echTel1|scaffold_324958 (76979-77652)
               

               
               1-332, gnl|fr1|chrUn (25546921-25547612)
               

               
               1-332, gnl|galGal2|chr6 (31238553-31237880)
               

               
               1-332, gnl|hg17|chr10 (126621213-126621886)
               

               
               1-332, gnl|Hg17|chr10 (126621227-126621558)
               

               
               1-332, gnl|loxAfr1|scaffold_5324 (4742-5415)
               

               
               1-332, gnl|Mm7|chr7 (129354690-129355021)
               

               
               1-332, gnl|monDom2|scaffold_144 (285001-285676)
               

               
               1-332, gnl|oryCun1|scaffold_161789 (7826-8500)
               

               
               1-332, gnl|panTro1|chr8 (129132047-129132720)
               

               
               1-332, gnl|rheMac2|chr9 (124542037-124542710)
               

               
               1-332, gnl|rn3|chr1 (192572066-192572737)
               

               
               1-332, gnl|tetNig1|chr17 (7491862-7491069)
               

               
               1-332, gnl|xenTro1|scaffold_97 (1566291-1566942)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	1-332, gnl\|bosTau2\|chr26 (31106299-31106630)
	1-332, gnl\|canFam2\|chr28 (37223274-37223944)
	1-332, gnl\|danRer3\|chr17 (5387324-5387991)
	1-332, gnl\|echTel1\|scaffold_324958 (76979-77652)
	1-332, gnl\|fr1\|chrUn (25546921-25547612)
	1-332, gnl\|galGal2\|chr6 (31238553-31237880)
	1-332, gnl\|hg17\|chr10 (126621213-126621886)
	1-332, gnl\|Hg17\|chr10 (126621227-126621558)
	1-332, gnl\|loxAfr1\|scaffold_5324 (4742-5415)
	1-332, gnl\|Mm7\|chr7 (129354690-129355021)
	1-332, gnl\|monDom2\|scaffold_144 (285001-285676)
	1-332, gnl\|oryCun1\|scaffold_161789 (7826-8500)
	1-332, gnl\|panTro1\|chr8 (129132047-129132720)
	1-332, gnl\|rheMac2\|chr9 (124542037-124542710)
	1-332, gnl\|rn3\|chr1 (192572066-192572737)
	1-332, gnl\|tetNig1\|chr17 (7491862-7491069)
	1-332, gnl\|xenTro1\|scaffold_97 (1566291-1566942)