Non-Coding RNA Search

rski0119_a21.y1

Sequence:


               
               CTGACTTTACTGAGTGAGAGAATTTCATGGATGGTGCTTAAGATGGAGACTGTGTAAGAA
TCTTGAATGAGCGTTGAAGATTTCAGAATTGaaaaaaaaaaaaaaaaaaagtgaagaagc
agaaaaaaaaaaaaaaaaaaaaaGATTTCAGAATGGGTTAGTCCCAGCAAGAGTGGAAAG
GATGCTTTGGGTATTTTACTGATACTAGGTGAAGAGACTTAAGGGCTAGATGGTTAAGGA
ATGAAATGAAGATCTTACATGGCTAGACCAAGGATGCTTTAATGATCATTCACTATAGGT
CACAGTAGTGTGAACAAGGATTTAGAAAATGGTTTCTTATTACTGGGATAATGATTACAC
TGTTTCATTTGGTACCAAGACTTAGTCAGAGTTCAAGTTGGCTTTACAAAAGTCACGTTC
AAGATGACATTGGTCATGTTCAAAATGGCAAGTCTTTAAAATAAATAGTGTTTTAGATAA
CTGAATCTTTTCATTCAGTGCAAACCATTCAGATGGAAAAAGTTCCTAAAATGGCTTTCT
TTAAATAATTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTTTACTGAGTGAGAGAATTTCATGGATGGTGCTTAAGATGGAGACTGTGTAAGAA
TCTTGAATGAGCGTTGAAGATTTCAGAATTGaaaaaaaaaaaaaaaaaaagtgaagaagc
agaaaaaaaaaaaaaaaaaaaaaGATTTCAGAATGGGTTAGTCCCAGCAAGAGTGGAAAG
GATGCTTTGGGTATTTTACTGATACTAGGTGAAGAGACTTAAGGGCTAGATGGTTAAGGA
ATGAAATGAAGATCTTACATGGCTAGACCAAGGATGCTTTAATGATCATTCACTATAGGT
CACAGTAGTGTGAACAAGGATTTAGAAAATGGTTTCTTATTACTGGGATAATGATTACAC
TGTTTCATTTGGTACCAAGACTTAGTCAGAGTTCAAGTTGGCTTTACAAAAGTCACGTTC
AAGATGACATTGGTCATGTTCAAAATGGCAAGTCTTTAAAATAAATAGTGTTTTAGATAA
CTGAATCTTTTCATTCAGTGCAAACCATTCAGATGGAAAAAGTTCCTAAAATGGCTTTCT
TTAAATAATTCACA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               142-280, gnl|bosTau2|chr5 (53010288-53010427)
               

               
               142-280, gnl|canFam2|chr27 (26106649-26106563)
               

               
               142-280, gnl|dasNov1|scaffold_65645 (8500-8439)
               

               
               142-280, gnl|echTel1|scaffold_317990 (26909-26997)
               

               
               142-280, gnl|hg17|chr12 (24361683-24361772)
               

               
               142-280, gnl|Hg17|chr12 (24361806-24361682)
               

               
               142-280, gnl|loxAfr1|scaffold_329 (93245-93330)
               

               
               142-280, gnl|mm7|chr6 (144634995-144635074)
               

               
               142-280, gnl|oryCun1|scaffold_207245 (16934-16851)
               

               
               142-280, gnl|panTro1|chrUn_random (50759124-50759213)
               

               
               142-280, gnl|rheMac2|chr11 (24584293-24584382)
               


               
               304-554, gnl|bosTau2|chr5 (53010767-53011015)
               

               
               304-554, gnl|Hg17|chr12 (24361620-24361385)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-280, gnl|bosTau2|chr5 (53010288-53010427)
               

               
               142-280, gnl|canFam2|chr27 (26106649-26106563)
               

               
               142-280, gnl|dasNov1|scaffold_65645 (8500-8439)
               

               
               142-280, gnl|echTel1|scaffold_317990 (26909-26997)
               

               
               142-280, gnl|hg17|chr12 (24361683-24361772)
               

               
               142-280, gnl|Hg17|chr12 (24361806-24361682)
               

               
               142-280, gnl|loxAfr1|scaffold_329 (93245-93330)
               

               
               142-280, gnl|mm7|chr6 (144634995-144635074)
               

               
               142-280, gnl|oryCun1|scaffold_207245 (16934-16851)
               

               
               142-280, gnl|panTro1|chrUn_random (50759124-50759213)
               

               
               142-280, gnl|rheMac2|chr11 (24584293-24584382)
               


               
               304-554, gnl|bosTau2|chr5 (53010767-53011015)
               

               
               304-554, gnl|Hg17|chr12 (24361620-24361385)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	142-280, gnl\|bosTau2\|chr5 (53010288-53010427)
	142-280, gnl\|canFam2\|chr27 (26106649-26106563)
	142-280, gnl\|dasNov1\|scaffold_65645 (8500-8439)
	142-280, gnl\|echTel1\|scaffold_317990 (26909-26997)
	142-280, gnl\|hg17\|chr12 (24361683-24361772)
	142-280, gnl\|Hg17\|chr12 (24361806-24361682)
	142-280, gnl\|loxAfr1\|scaffold_329 (93245-93330)
	142-280, gnl\|mm7\|chr6 (144634995-144635074)
	142-280, gnl\|oryCun1\|scaffold_207245 (16934-16851)
	142-280, gnl\|panTro1\|chrUn_random (50759124-50759213)
	142-280, gnl\|rheMac2\|chr11 (24584293-24584382)

	304-554, gnl\|bosTau2\|chr5 (53010767-53011015)
	304-554, gnl\|Hg17\|chr12 (24361620-24361385)