Non-Coding RNA Search

rski0120_l4.y1

Sequence:


               
               ATTTTATTGCAGCCCATTTTAAATATTTGTACAGAAATGTTTTTCTTTCTGTGAAATTTT
ATTTGGAGTTCTGTATGAAACTGGAAGAACTCTGGATACTTTTATATGTTCTCTTTTAAT
TAAAAAATGAGTAAAATTATCCTAACACTAAAGTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATTGCAGCCCATTTTAAATATTTGTACAGAAATGTTTTTCTTTCTGTGAAATTTT
ATTTGGAGTTCTGTATGAAACTGGAAGAACTCTGGATACTTTTATATGTTCTCTTTTAAT
TAAAAAATGAGTAAAATTATCCTAACACTAAAGTGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-94, - strand, RNAz p=0.918347

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, - strand, RNAz p=0.918347

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-158, gnl|bosTau2|chr19 (28482010-28481857)
               

               
               1-158, gnl|canFam2|chr9 (30336495-30337114)
               

               
               1-158, gnl|dasNov1|scaffold_12680 (44688-45254)
               

               
               1-158, gnl|echTel1|scaffold_310655 (71554-72142)
               

               
               1-158, gnl|hg17|chr17 (46611791-46612405)
               

               
               1-158, gnl|Hg17|chr17 (46612388-46612230)
               

               
               1-158, gnl|loxAfr1|scaffold_22547 (16421-17004)
               

               
               1-158, gnl|mm7|chr11 (94054021-94053446)
               

               
               1-158, gnl|Mm7|chr11 (94053462-94053615)
               

               
               1-158, gnl|monDom2|scaffold_124 (2115808-2115208)
               

               
               1-158, gnl|oryCun1|scaffold_206014 (37595-37004)
               

               
               1-158, gnl|panTro1|chr19_random (32254245-32254822)
               

               
               1-158, gnl|rheMac2|chr16 (35415202-35415776)
               

               
               1-158, gnl|rn3|chr10 (82592452-82591893)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-158, gnl|bosTau2|chr19 (28482010-28481857)
               

               
               1-158, gnl|canFam2|chr9 (30336495-30337114)
               

               
               1-158, gnl|dasNov1|scaffold_12680 (44688-45254)
               

               
               1-158, gnl|echTel1|scaffold_310655 (71554-72142)
               

               
               1-158, gnl|hg17|chr17 (46611791-46612405)
               

               
               1-158, gnl|Hg17|chr17 (46612388-46612230)
               

               
               1-158, gnl|loxAfr1|scaffold_22547 (16421-17004)
               

               
               1-158, gnl|mm7|chr11 (94054021-94053446)
               

               
               1-158, gnl|Mm7|chr11 (94053462-94053615)
               

               
               1-158, gnl|monDom2|scaffold_124 (2115808-2115208)
               

               
               1-158, gnl|oryCun1|scaffold_206014 (37595-37004)
               

               
               1-158, gnl|panTro1|chr19_random (32254245-32254822)
               

               
               1-158, gnl|rheMac2|chr16 (35415202-35415776)
               

               
               1-158, gnl|rn3|chr10 (82592452-82591893)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	1-158, gnl\|bosTau2\|chr19 (28482010-28481857)
	1-158, gnl\|canFam2\|chr9 (30336495-30337114)
	1-158, gnl\|dasNov1\|scaffold_12680 (44688-45254)
	1-158, gnl\|echTel1\|scaffold_310655 (71554-72142)
	1-158, gnl\|hg17\|chr17 (46611791-46612405)
	1-158, gnl\|Hg17\|chr17 (46612388-46612230)
	1-158, gnl\|loxAfr1\|scaffold_22547 (16421-17004)
	1-158, gnl\|mm7\|chr11 (94054021-94053446)
	1-158, gnl\|Mm7\|chr11 (94053462-94053615)
	1-158, gnl\|monDom2\|scaffold_124 (2115808-2115208)
	1-158, gnl\|oryCun1\|scaffold_206014 (37595-37004)
	1-158, gnl\|panTro1\|chr19_random (32254245-32254822)
	1-158, gnl\|rheMac2\|chr16 (35415202-35415776)
	1-158, gnl\|rn3\|chr10 (82592452-82591893)