Non-Coding RNA Search

rski0121_f15.y1

Sequence:


               
               AAGACATTAAATATGGGATAAGGTGATGAAGAGAACTGAGTGTAAGAATGGTCAGTGAAA
ATATCACCCCATTACCCTTCAAATACAAAATTTAGTACCTAAAAATATTTGGACCAGTGA
TCGGCATTTTTAGAGCATTTTGAGAGATCTACTCAAATTAGGTCTTTTGGCCTTTGAGCT
GTGACTTACAGCAACAAAAGGTGCTAGGTAAGAGTGTTGTACGGCTTTCTGCTGTATTTG
GGAAAGATAGTAGGTATCCTTCGTGTCTCTACCAAAACTGGTAAATTGAATCTTGCTCTC
TTCTGGTGTGTAACAGTCAATTTTATTTTCTTTATTTCTTATGATTTATTTCTGCTCTCT
CCCTGACCCCATTCCCTCAGAGACCTTTCTCCAGTGTCTCATTGTCCTGTGTGTTTGTAT
CAGTTCAGGTGCTGTGTAATCAATTCTAGATCATCAATATCTAATTTTAAATACCAGGGT
AGGTTGTTCTTAGCACACACTAGGGTAGGGCTGCTTTACTATCCCCTCCCACACCAGTTG
TCCCATGTGTATGTATTCAAGAAATGTCAGCAAATTTGCAGCATAAGCAATATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACATTAAATATGGGATAAGGTGATGAAGAGAACTGAGTGTAAGAATGGTCAGTGAAA
ATATCACCCCATTACCCTTCAAATACAAAATTTAGTACCTAAAAATATTTGGACCAGTGA
TCGGCATTTTTAGAGCATTTTGAGAGATCTACTCAAATTAGGTCTTTTGGCCTTTGAGCT
GTGACTTACAGCAACAAAAGGTGCTAGGTAAGAGTGTTGTACGGCTTTCTGCTGTATTTG
GGAAAGATAGTAGGTATCCTTCGTGTCTCTACCAAAACTGGTAAATTGAATCTTGCTCTC
TTCTGGTGTGTAACAGTCAATTTTATTTTCTTTATTTCTTATGATTTATTTCTGCTCTCT
CCCTGACCCCATTCCCTCAGAGACCTTTCTCCAGTGTCTCATTGTCCTGTGTGTTTGTAT
CAGTTCAGGTGCTGTGTAATCAATTCTAGATCATCAATATCTAATTTTAAATACCAGGGT
AGGTTGTTCTTAGCACACACTAGGGTAGGGCTGCTTTACTATCCCCTCCCACACCAGTTG
TCCCATGTGTATGTATTCAAGAAATGTCAGCAAATTTGCAGCATAAGCAATATGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               379-497, + strand, RNAz p=0.806229

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-497, + strand, RNAz p=0.806229

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               43-510, gnl|bosTau2|chr29 (36404054-36403591)
               

               
               43-510, gnl|canFam2|chr18 (53258287-53257915)
               

               
               43-510, gnl|hg17|chr11 (66699990-66700434)
               

               
               43-510, gnl|Hg17|chr11 (66700016-66700474)
               

               
               43-510, gnl|panTro1|chr9 (67954643-67955087)
               

               
               43-510, gnl|rheMac2|chr14 (7293203-7292762)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-510, gnl|bosTau2|chr29 (36404054-36403591)
               

               
               43-510, gnl|canFam2|chr18 (53258287-53257915)
               

               
               43-510, gnl|hg17|chr11 (66699990-66700434)
               

               
               43-510, gnl|Hg17|chr11 (66700016-66700474)
               

               
               43-510, gnl|panTro1|chr9 (67954643-67955087)
               

               
               43-510, gnl|rheMac2|chr14 (7293203-7292762)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	43-510, gnl\|bosTau2\|chr29 (36404054-36403591)
	43-510, gnl\|canFam2\|chr18 (53258287-53257915)
	43-510, gnl\|hg17\|chr11 (66699990-66700434)
	43-510, gnl\|Hg17\|chr11 (66700016-66700474)
	43-510, gnl\|panTro1\|chr9 (67954643-67955087)
	43-510, gnl\|rheMac2\|chr14 (7293203-7292762)