Non-Coding RNA Search

rski0135_c3.y1

Sequence:


               
               CCATATAGGAGTATCGATCCAGAAATGCGCATTTACTGCTGAGCCAGCACTAACTGTTTA
AAGGCTAGATTTCTCATTCTTTACCATAGTGCAGTCCAATAAAACTTTCTGCAGTGACGG
AGATGTTTTATATCTTGTGCTATACAACAGTAGCCAGAAATCACACATGGTTGTAGAGCA
TATAAATATGGCTACTGCAGACTAAATAACTGAATTTTTATTTTTAAGATAATCTAAATT
TGATGCAGCCAGTGGCTACAAAGGAGTGACATATCTCATCTAGGAATGAGAACTAGAAGA
TGGCGATCATATAAGGACAGAGGCTACAGAAATGTACCTGCCAATGGTTAATAAGTTTCT
AACTAGTGATTCTTCCTTCCACAAGGACTTTATCCACCATGAAATACTGCCTTACGTCTA
AGTGGGAGAAATTCTCAAACTATCTGATCGACATGAAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATATAGGAGTATCGATCCAGAAATGCGCATTTACTGCTGAGCCAGCACTAACTGTTTA
AAGGCTAGATTTCTCATTCTTTACCATAGTGCAGTCCAATAAAACTTTCTGCAGTGACGG
AGATGTTTTATATCTTGTGCTATACAACAGTAGCCAGAAATCACACATGGTTGTAGAGCA
TATAAATATGGCTACTGCAGACTAAATAACTGAATTTTTATTTTTAAGATAATCTAAATT
TGATGCAGCCAGTGGCTACAAAGGAGTGACATATCTCATCTAGGAATGAGAACTAGAAGA
TGGCGATCATATAAGGACAGAGGCTACAGAAATGTACCTGCCAATGGTTAATAAGTTTCT
AACTAGTGATTCTTCCTTCCACAAGGACTTTATCCACCATGAAATACTGCCTTACGTCTA
AGTGGGAGAAATTCTCAAACTATCTGATCGACATGAAAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               118-231, + strand, RNAz p=0.934728

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-231, + strand, RNAz p=0.934728

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               50-408, gnl|bosTau2|chr5 (33767373-33767737)
               

               
               50-408, gnl|canFam2|chr11 (53187055-53187638)
               

               
               50-408, gnl|dasNov1|scaffold_95500 (5682-6218)
               

               
               50-408, gnl|echTel1|scaffold_234376 (5297-4904)
               

               
               50-408, gnl|hg17|chr9 (33018958-33019500)
               

               
               50-408, gnl|Hg17|chr9 (33019330-33018957)
               

               
               50-408, gnl|loxAfr1|scaffold_6350 (32936-33523)
               

               
               50-408, gnl|mm7|chr4 (40863754-40864238)
               

               
               50-408, gnl|Mm7|chr4 (40864089-40863747)
               

               
               50-408, gnl|oryCun1|scaffold_140297 (1796-1317)
               

               
               50-408, gnl|panTro1|chr11 (33513640-33514179)
               

               
               50-408, gnl|rheMac2|chr15 (44192321-44191802)
               

               
               50-408, gnl|rn3|chr5 (58104283-58104793)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-408, gnl|bosTau2|chr5 (33767373-33767737)
               

               
               50-408, gnl|canFam2|chr11 (53187055-53187638)
               

               
               50-408, gnl|dasNov1|scaffold_95500 (5682-6218)
               

               
               50-408, gnl|echTel1|scaffold_234376 (5297-4904)
               

               
               50-408, gnl|hg17|chr9 (33018958-33019500)
               

               
               50-408, gnl|Hg17|chr9 (33019330-33018957)
               

               
               50-408, gnl|loxAfr1|scaffold_6350 (32936-33523)
               

               
               50-408, gnl|mm7|chr4 (40863754-40864238)
               

               
               50-408, gnl|Mm7|chr4 (40864089-40863747)
               

               
               50-408, gnl|oryCun1|scaffold_140297 (1796-1317)
               

               
               50-408, gnl|panTro1|chr11 (33513640-33514179)
               

               
               50-408, gnl|rheMac2|chr15 (44192321-44191802)
               

               
               50-408, gnl|rn3|chr5 (58104283-58104793)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	50-408, gnl\|bosTau2\|chr5 (33767373-33767737)
	50-408, gnl\|canFam2\|chr11 (53187055-53187638)
	50-408, gnl\|dasNov1\|scaffold_95500 (5682-6218)
	50-408, gnl\|echTel1\|scaffold_234376 (5297-4904)
	50-408, gnl\|hg17\|chr9 (33018958-33019500)
	50-408, gnl\|Hg17\|chr9 (33019330-33018957)
	50-408, gnl\|loxAfr1\|scaffold_6350 (32936-33523)
	50-408, gnl\|mm7\|chr4 (40863754-40864238)
	50-408, gnl\|Mm7\|chr4 (40864089-40863747)
	50-408, gnl\|oryCun1\|scaffold_140297 (1796-1317)
	50-408, gnl\|panTro1\|chr11 (33513640-33514179)
	50-408, gnl\|rheMac2\|chr15 (44192321-44191802)
	50-408, gnl\|rn3\|chr5 (58104283-58104793)