Non-Coding RNA Search

rski0135_p20.y1

Sequence:


               
               GCCGACTGACTTAGCTTTAAAATCTTTTCTGGTTCTCTTTCTTTGTTCTGTATCTTGGTT
GCTAGCCATCCAGTTTGAAAACACTGTTCTGGCCCTAAGGGCTTTTGTGTATTTCCAAAG
CTCGGTAGGCTGTGACCTGCACTGTTGAACTTGTTAGGGCAGCGAAACCTTAAACATTCA
AAGAATTTTCTCTTGAATAAATATATGTGTTGTTTACACATATACATATATGTATTCGCA
CATCAGTGCTTTTAAAGGAAAACCAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGACTGACTTAGCTTTAAAATCTTTTCTGGTTCTCTTTCTTTGTTCTGTATCTTGGTT
GCTAGCCATCCAGTTTGAAAACACTGTTCTGGCCCTAAGGGCTTTTGTGTATTTCCAAAG
CTCGGTAGGCTGTGACCTGCACTGTTGAACTTGTTAGGGCAGCGAAACCTTAAACATTCA
AAGAATTTTCTCTTGAATAAATATATGTGTTGTTTACACATATACATATATGTATTCGCA
CATCAGTGCTTTTAAAGGAAAACCAAACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-159, + strand, RNAz p=0.509757
               

               
               144-245, - strand, RNAz p=0.918269

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.509757
               

               
               144-245, - strand, RNAz p=0.918269

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-270, gnl|bosTau2|chr3 (57868765-57868495)
               

               
               1-270, gnl|canFam2|chr5 (55819929-55819224)
               

               
               1-270, gnl|dasNov1|scaffold_118859 (1857-1190)
               

               
               1-270, gnl|echTel1|scaffold_267605 (20140-20824)
               

               
               1-270, gnl|hg17|chr1 (56886248-56886839)
               

               
               1-270, gnl|loxAfr1|scaffold_71711 (4909-4197)
               

               
               1-270, gnl|mm7|chr4 (104411862-104411236)
               

               
               1-270, gnl|Mm7|chr4 (104411648-104411427)
               

               
               1-270, gnl|monDom2|scaffold_40 (19026686-19026082)
               

               
               1-270, gnl|panTro1|chr1 (55226833-55227423)
               

               
               1-270, gnl|rheMac2|chr1 (59578156-59578769)
               

               
               1-270, gnl|rn3|chr5 (126013221-126012596)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-270, gnl|bosTau2|chr3 (57868765-57868495)
               

               
               1-270, gnl|canFam2|chr5 (55819929-55819224)
               

               
               1-270, gnl|dasNov1|scaffold_118859 (1857-1190)
               

               
               1-270, gnl|echTel1|scaffold_267605 (20140-20824)
               

               
               1-270, gnl|hg17|chr1 (56886248-56886839)
               

               
               1-270, gnl|loxAfr1|scaffold_71711 (4909-4197)
               

               
               1-270, gnl|mm7|chr4 (104411862-104411236)
               

               
               1-270, gnl|Mm7|chr4 (104411648-104411427)
               

               
               1-270, gnl|monDom2|scaffold_40 (19026686-19026082)
               

               
               1-270, gnl|panTro1|chr1 (55226833-55227423)
               

               
               1-270, gnl|rheMac2|chr1 (59578156-59578769)
               

               
               1-270, gnl|rn3|chr5 (126013221-126012596)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	41-159, + strand, RNAz p=0.509757
	144-245, - strand, RNAz p=0.918269

	1-270, gnl\|bosTau2\|chr3 (57868765-57868495)
	1-270, gnl\|canFam2\|chr5 (55819929-55819224)
	1-270, gnl\|dasNov1\|scaffold_118859 (1857-1190)
	1-270, gnl\|echTel1\|scaffold_267605 (20140-20824)
	1-270, gnl\|hg17\|chr1 (56886248-56886839)
	1-270, gnl\|loxAfr1\|scaffold_71711 (4909-4197)
	1-270, gnl\|mm7\|chr4 (104411862-104411236)
	1-270, gnl\|Mm7\|chr4 (104411648-104411427)
	1-270, gnl\|monDom2\|scaffold_40 (19026686-19026082)
	1-270, gnl\|panTro1\|chr1 (55226833-55227423)
	1-270, gnl\|rheMac2\|chr1 (59578156-59578769)
	1-270, gnl\|rn3\|chr5 (126013221-126012596)