Non-Coding RNA Search

rski0137_p4.y1

Sequence:


               
               ATCCTCTATGTGGAGTCATTTTAGCTGACACAGCGGTGCTGTGAGCTCCACTCAGTCATT
GAACGAGGTCCAGAGTTCACAAGGCCATTGGCTTTTTAACCAAGTCCATAGGCTGCAGCA
GTGGATTGATGCCAGCCACCAAGCCGGCCTTGGGGGCAGAGTCTTGAATTGGTTTCCAAT
TCCTAACAAAAGCATCAGGAGGGAAATGCTCAGGACTCTGCCAGGGGATTAGCTGAGCAT
GGAAATCCCACTCTATCTAAATATGGCGTATTCTAACCAGAGTTCCAGTGCAAAGGAAAG
CTATCTTGTGCCAGCTCTTGGAACAGTGAGCCTTTGTTTTCTGTGAATGTATGTTTCTTT
GCCAAACCTTTTTTTCTTTTTTTTTTCTTTTTTAATCAAGAGAAGCATTTATAGTTTTCT
AGACTAAAGATCTAATGAATGGATGTTTCACAGTGTCAGTGTATAGTTGTAAGGAGTGCT
ACTGGAAGAAAAAAGCCTTCTAATACATGCCTTGTTTATTAAAGCATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTCTATGTGGAGTCATTTTAGCTGACACAGCGGTGCTGTGAGCTCCACTCAGTCATT
GAACGAGGTCCAGAGTTCACAAGGCCATTGGCTTTTTAACCAAGTCCATAGGCTGCAGCA
GTGGATTGATGCCAGCCACCAAGCCGGCCTTGGGGGCAGAGTCTTGAATTGGTTTCCAAT
TCCTAACAAAAGCATCAGGAGGGAAATGCTCAGGACTCTGCCAGGGGATTAGCTGAGCAT
GGAAATCCCACTCTATCTAAATATGGCGTATTCTAACCAGAGTTCCAGTGCAAAGGAAAG
CTATCTTGTGCCAGCTCTTGGAACAGTGAGCCTTTGTTTTCTGTGAATGTATGTTTCTTT
GCCAAACCTTTTTTTCTTTTTTTTTTCTTTTTTAATCAAGAGAAGCATTTATAGTTTTCT
AGACTAAAGATCTAATGAATGGATGTTTCACAGTGTCAGTGTATAGTTGTAAGGAGTGCT
ACTGGAAGAAAAAAGCCTTCTAATACATGCCTTGTTTATTAAAGCATAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               30-262, + strand, RNAz p=0.997936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-262, + strand, RNAz p=0.997936

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-527, gnl|bosTau2|chr20 (14529218-14528740)
               

               
               30-527, gnl|Hg17|chr5 (52419560-52419081)
               

               
               30-527, gnl|Mm7|chr13 (112010955-112011417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-527, gnl|bosTau2|chr20 (14529218-14528740)
               

               
               30-527, gnl|Hg17|chr5 (52419560-52419081)
               

               
               30-527, gnl|Mm7|chr13 (112010955-112011417)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	30-527, gnl\|bosTau2\|chr20 (14529218-14528740)
	30-527, gnl\|Hg17\|chr5 (52419560-52419081)
	30-527, gnl\|Mm7\|chr13 (112010955-112011417)