Non-Coding RNA Search

rski0139_c9.y1

Sequence:


               
               CAGTTTGAATATAATATGGAAGGAGTTACCACCAAGGAAATGGCTACACAACTTGCCTTC
ATGCGCCTGCTGGCCAACCATGCCTCCCAAAACATCACCTACCATTGCAAGAACAGCATT
GCATACATGGATGAAGAGACTGGCAACCTGAAAAAGGCTGTCATTCTGCAAGGATCCAAT
GATGTTGAACTTGTTGCCGAGGGCAACAGCAGATTCACCTACACTGTTCTTGTAGATGGC
TGTTCTAAAAAAACAAATGAATGGAGAAAAACAATCATTGAATATAAAACAAATAAGCCA
TCTCGCCTGCCTATCCTTGATATTGCACCTTTGGACATCGGTGATGCTGACCAAGAAGTC
AGTGTGGACGTTGGCCCAGTCTGTTTCAAATAAATGAACTCAACCTAAATTAAAGAAAAA
GGAAATCTGAAAAATTTCTCTCTTTGCCATTTCTTTTTCTTCTTTTTTAACTGAAAGCTG
AATCATTCCATTTCTTCTGCACATCTACTTGCTTAAATTGTGGGCAAAAGAGAAGGAGAA
GGATTGATCAGAGCATCGTGCAATACAATTAATTCGTTCCCTGTCCCTCTTCCCCTCCCC
AAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTTGAATATAATATGGAAGGAGTTACCACCAAGGAAATGGCTACACAACTTGCCTTC
ATGCGCCTGCTGGCCAACCATGCCTCCCAAAACATCACCTACCATTGCAAGAACAGCATT
GCATACATGGATGAAGAGACTGGCAACCTGAAAAAGGCTGTCATTCTGCAAGGATCCAAT
GATGTTGAACTTGTTGCCGAGGGCAACAGCAGATTCACCTACACTGTTCTTGTAGATGGC
TGTTCTAAAAAAACAAATGAATGGAGAAAAACAATCATTGAATATAAAACAAATAAGCCA
TCTCGCCTGCCTATCCTTGATATTGCACCTTTGGACATCGGTGATGCTGACCAAGAAGTC
AGTGTGGACGTTGGCCCAGTCTGTTTCAAATAAATGAACTCAACCTAAATTAAAGAAAAA
GGAAATCTGAAAAATTTCTCTCTTTGCCATTTCTTTTTCTTCTTTTTTAACTGAAAGCTG
AATCATTCCATTTCTTCTGCACATCTACTTGCTTAAATTGTGGGCAAAAGAGAAGGAGAA
GGATTGATCAGAGCATCGTGCAATACAATTAATTCGTTCCCTGTCCCTCTTCCCCTCCCC
AAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15408577|dbj|BAB64258.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15408577|dbj|BAB64258.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-159, - strand, RNAz p=0.563978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, - strand, RNAz p=0.563978

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-242, gnl|bosTau2|chr19 (29188499-29188700)
               

               
               41-242, gnl|Hg17|chr17 (45618343-45618142)
               

               
               41-242, gnl|Mm7|chr11 (95060177-95060378)
               


               
               247-605, gnl|bosTau2|chr4 (2991127-2991481)
               

               
               247-605, gnl|Hg17|chr7 (93704210-93704563)
               

               
               247-605, gnl|Mm7|chr6 (4493402-4493767)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-242, gnl|bosTau2|chr19 (29188499-29188700)
               

               
               41-242, gnl|Hg17|chr17 (45618343-45618142)
               

               
               41-242, gnl|Mm7|chr11 (95060177-95060378)
               


               
               247-605, gnl|bosTau2|chr4 (2991127-2991481)
               

               
               247-605, gnl|Hg17|chr7 (93704210-93704563)
               

               
               247-605, gnl|Mm7|chr6 (4493402-4493767)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	41-242, gnl\|bosTau2\|chr19 (29188499-29188700)
	41-242, gnl\|Hg17\|chr17 (45618343-45618142)
	41-242, gnl\|Mm7\|chr11 (95060177-95060378)

	247-605, gnl\|bosTau2\|chr4 (2991127-2991481)
	247-605, gnl\|Hg17\|chr7 (93704210-93704563)
	247-605, gnl\|Mm7\|chr6 (4493402-4493767)