Non-Coding RNA Search

rski0139_o3.y1

Sequence:


               
               GGGAGCTTCAATATAAAGCTATGTAGTTACTGAAATTCTAAAAAGCTATTAGATATTTTC
TAGTTCAGCTGTGTTTGGTGCTTGATTTAAGTTTAAACAAAATGTATCTGAGAGCACATA
GCTGAAGAAATTCAGGGCACTAGTTTAAGGGTGAAAAGAAGAGCCTAAACTCCTCAAATT
TGGTAGCTTGATTAGCAAAAATAGAAGCTGACATATTATCCATCATTGAAACACATCGGT
AAGAAATATTTACTGCTAACAGTCCCTTACTGGAGTAATTTGCTTTTTTTTTAGTTTGTT
TTTGCAAGCTTGAGATTTTAAAAACCTTTTCTCTTACTTGCACTTTAAGTCATAACATTT
CTTATGTTTCATTGCAGCTCCAAAAAGCCTTCCAGAATTTCCTCAGGCAAAAACACCCTT
CCCATTTGAGAAATCTTGGGGCACCTTGGGTAATGATAGCACCTTAAATCTGCTGTTAAG
ATGTGGGTGGTAATTGCTTAATTCTGAAGGATAGTTTACTGGATCCTATCTACGCAAACC
TCAACAAACTGATGAATTCAGTTAACTCAGCCAAACAAGTAGTTAATTTCAAAAGTTAAA
AAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCTTCAATATAAAGCTATGTAGTTACTGAAATTCTAAAAAGCTATTAGATATTTTC
TAGTTCAGCTGTGTTTGGTGCTTGATTTAAGTTTAAACAAAATGTATCTGAGAGCACATA
GCTGAAGAAATTCAGGGCACTAGTTTAAGGGTGAAAAGAAGAGCCTAAACTCCTCAAATT
TGGTAGCTTGATTAGCAAAAATAGAAGCTGACATATTATCCATCATTGAAACACATCGGT
AAGAAATATTTACTGCTAACAGTCCCTTACTGGAGTAATTTGCTTTTTTTTTAGTTTGTT
TTTGCAAGCTTGAGATTTTAAAAACCTTTTCTCTTACTTGCACTTTAAGTCATAACATTT
CTTATGTTTCATTGCAGCTCCAAAAAGCCTTCCAGAATTTCCTCAGGCAAAAACACCCTT
CCCATTTGAGAAATCTTGGGGCACCTTGGGTAATGATAGCACCTTAAATCTGCTGTTAAG
ATGTGGGTGGTAATTGCTTAATTCTGAAGGATAGTTTACTGGATCCTATCTACGCAAACC
TCAACAAACTGATGAATTCAGTTAACTCAGCCAAACAAGTAGTTAATTTCAAAAGTTAAA
AAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               297-414, - strand, RNAz p=0.559931

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-414, - strand, RNAz p=0.559931

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-589, gnl|bosTau2|chr11 (53711684-53712301)
               

               
               1-589, gnl|Hg17|chr3 (102065108-102064242)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-589, gnl|bosTau2|chr11 (53711684-53712301)
               

               
               1-589, gnl|Hg17|chr3 (102065108-102064242)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	1-589, gnl\|bosTau2\|chr11 (53711684-53712301)
	1-589, gnl\|Hg17\|chr3 (102065108-102064242)