Non-Coding RNA Search

rsme001_b10.y1

Sequence:


               
               AGCCTCCTCTCAGACTCTGGGAGCCAGAGGCGCCCAACGCCAGAGGTCCCCAAGGGGGCC
CGAGAGAGGAAAGAATAGTAAAGGCACGGGTACCTCCTGTTTCTCAGAAAAGACAAAGAC
TGCGCAGAACTCATGGGTGGATTGAAAACAGGTGACCGGAAAGGAGGCGAGGAAAAGTGT
CAGGTAACCGGAAGGAAGTAACTCCTCTTCCTCTTGGGGAAACGTTTGTATTACATATTG
TACGGGAAAGAACGTCATCCTGTTTGGTTCCAGAATTTGCTGGCAGCAGAGTCAGACTCT
GCTGTATTCATTTTTAGTATGAAATGCAGTTGAGAGCTTCATTTTTGAATAGACTTAATT
CCTGTCCGTGGGGAAAGGAGTGTATCTTCCTGTAAGAAATGTAGCTCAAGCACAGAAAAC
TGAAAAGAAGGAAAACCCATTTATTGTCTCCCCACCCAAAGACGGGTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTCCTCTCAGACTCTGGGAGCCAGAGGCGCCCAACGCCAGAGGTCCCCAAGGGGGCC
CGAGAGAGGAAAGAATAGTAAAGGCACGGGTACCTCCTGTTTCTCAGAAAAGACAAAGAC
TGCGCAGAACTCATGGGTGGATTGAAAACAGGTGACCGGAAAGGAGGCGAGGAAAAGTGT
CAGGTAACCGGAAGGAAGTAACTCCTCTTCCTCTTGGGGAAACGTTTGTATTACATATTG
TACGGGAAAGAACGTCATCCTGTTTGGTTCCAGAATTTGCTGGCAGCAGAGTCAGACTCT
GCTGTATTCATTTTTAGTATGAAATGCAGTTGAGAGCTTCATTTTTGAATAGACTTAATT
CCTGTCCGTGGGGAAAGGAGTGTATCTTCCTGTAAGAAATGTAGCTCAAGCACAGAAAAC
TGAAAAGAAGGAAAACCCATTTATTGTCTCCCCACCCAAAGACGGGTGTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               248-469, - strand, RNAz p=0.759104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-469, - strand, RNAz p=0.759104

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-469, gnl|bosTau2|chr8 (54292656-54293129)
               

               
               1-469, gnl|echTel1|scaffold_289197 (43043-43347)
               

               
               1-469, gnl|hg17|chr9 (110642827-110643182)
               

               
               1-469, gnl|Hg17|chr9 (110642852-110643325)
               

               
               1-469, gnl|loxAfr1|scaffold_3069 (70668-70325)
               

               
               1-469, gnl|mm7|chr4 (58415106-58415442)
               

               
               1-469, gnl|Mm7|chr4 (58415131-58415579)
               

               
               1-469, gnl|monDom2|scaffold_17 (26360241-26360610)
               

               
               1-469, gnl|oryCun1|scaffold_198669 (4445-4088)
               

               
               1-469, gnl|panTro1|chr11 (95163721-95164076)
               

               
               1-469, gnl|rheMac2|chr15 (25383260-25382909)
               

               
               1-469, gnl|rn3|chr5 (76393602-76393940)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-469, gnl|bosTau2|chr8 (54292656-54293129)
               

               
               1-469, gnl|echTel1|scaffold_289197 (43043-43347)
               

               
               1-469, gnl|hg17|chr9 (110642827-110643182)
               

               
               1-469, gnl|Hg17|chr9 (110642852-110643325)
               

               
               1-469, gnl|loxAfr1|scaffold_3069 (70668-70325)
               

               
               1-469, gnl|mm7|chr4 (58415106-58415442)
               

               
               1-469, gnl|Mm7|chr4 (58415131-58415579)
               

               
               1-469, gnl|monDom2|scaffold_17 (26360241-26360610)
               

               
               1-469, gnl|oryCun1|scaffold_198669 (4445-4088)
               

               
               1-469, gnl|panTro1|chr11 (95163721-95164076)
               

               
               1-469, gnl|rheMac2|chr15 (25383260-25382909)
               

               
               1-469, gnl|rn3|chr5 (76393602-76393940)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	1-469, gnl\|bosTau2\|chr8 (54292656-54293129)
	1-469, gnl\|echTel1\|scaffold_289197 (43043-43347)
	1-469, gnl\|hg17\|chr9 (110642827-110643182)
	1-469, gnl\|Hg17\|chr9 (110642852-110643325)
	1-469, gnl\|loxAfr1\|scaffold_3069 (70668-70325)
	1-469, gnl\|mm7\|chr4 (58415106-58415442)
	1-469, gnl\|Mm7\|chr4 (58415131-58415579)
	1-469, gnl\|monDom2\|scaffold_17 (26360241-26360610)
	1-469, gnl\|oryCun1\|scaffold_198669 (4445-4088)
	1-469, gnl\|panTro1\|chr11 (95163721-95164076)
	1-469, gnl\|rheMac2\|chr15 (25383260-25382909)
	1-469, gnl\|rn3\|chr5 (76393602-76393940)