Non-Coding RNA Search

rsme003_l24.y1

Sequence:


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTAATGTATTCTTCCTCAAAAGGGCA
GAATCCAGGCCTGATGCAGTGTGAGAGGAGTTAGGCTGTTCTATAAACTGTTAGAGAGAT
GTAAAAAATAGGCAATCTAATTGACTCATACATGGCTCACAGCCATGTAAATGCTTGCAA
AATTGCTTCTTGCGCATTAGTAGTGACCACAGAGAAGCAGAAGTAAAATGGAAGCAAGCA
AGACAAGGACTCTTAGGAAATCTTTAAAAGGACTTTGAAACTTTTGTTAAACTTTTGGTT
GAATCTTGTGTAGAACTGTCCTTTGGAAAATTAAATGCATTTAGATGAGCATAGTGCAAG
TCAACATTCACATACTTTGCCTACAAAATAATACTTCTTTGGTGATAACTTTCATTTTCT
ACAAATACAGTGTCTTCCAGAACCAACTGCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTAATGTATTCTTCCTCAAAAGGGCA
GAATCCAGGCCTGATGCAGTGTGAGAGGAGTTAGGCTGTTCTATAAACTGTTAGAGAGAT
GTAAAAAATAGGCAATCTAATTGACTCATACATGGCTCACAGCCATGTAAATGCTTGCAA
AATTGCTTCTTGCGCATTAGTAGTGACCACAGAGAAGCAGAAGTAAAATGGAAGCAAGCA
AGACAAGGACTCTTAGGAAATCTTTAAAAGGACTTTGAAACTTTTGTTAAACTTTTGGTT
GAATCTTGTGTAGAACTGTCCTTTGGAAAATTAAATGCATTTAGATGAGCATAGTGCAAG
TCAACATTCACATACTTTGCCTACAAAATAATACTTCTTTGGTGATAACTTTCATTTTCT
ACAAATACAGTGTCTTCCAGAACCAACTGCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-248, + strand, RNAz p=0.793666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-248, + strand, RNAz p=0.793666

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-451, gnl|bosTau2|chr24 (25324614-25324177)
               

               
               13-451, gnl|Hg17|chr18 (16997895-16998335)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-451, gnl|bosTau2|chr24 (25324614-25324177)
               

               
               13-451, gnl|Hg17|chr18 (16997895-16998335)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	13-451, gnl\|bosTau2\|chr24 (25324614-25324177)
	13-451, gnl\|Hg17\|chr18 (16997895-16998335)