Non-Coding RNA Search

rsme005_b21.y1

Sequence:


               
               TGCACTGCTCTGGCCTTCCTGCTGATGGCAGCGGCAGATTCGTCCTGCTTCTCCTGAGCG
GACTTCCTCCACCCGTGCTCTCCAGCCCTTCTCCTCAAAACACACCAATCTCTCTCGCTT
AGGGAATTGCGAACTTCAGTCTCACCCCTTCACTGGCTCCTTCCACCAAGTACACACTTC
ACTTAACCTGGAACACCCTTTCCACCCGTGCTCTCACCTTCAAGCTTACAACCTCTGCTG
CTTCACCTTTGTTTCAAAATCTTTAAATGCAGCACAAAGGAAAACATTTATTGGCCTATC
ATAAGCAAGACACTACAAATATTATTTAAATCTCATGACCTTCACACAtattatccctac
tttacagaggaggaaactgaggctcagagactttatacaacttgctgaggtctcagagtt
cccgttgtggcgcactggttaatgaatccgactaagaaccatgaggttgcgggttcgatc
cctggccttgctcagtgggttaaggatttggtgttgctgtgagctgtggtgtgggttgaa
gacgcagctcggatcccgtgctgctgtggctctggATTGGCCGGTGATTAGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACTGCTCTGGCCTTCCTGCTGATGGCAGCGGCAGATTCGTCCTGCTTCTCCTGAGCG
GACTTCCTCCACCCGTGCTCTCCAGCCCTTCTCCTCAAAACACACCAATCTCTCTCGCTT
AGGGAATTGCGAACTTCAGTCTCACCCCTTCACTGGCTCCTTCCACCAAGTACACACTTC
ACTTAACCTGGAACACCCTTTCCACCCGTGCTCTCACCTTCAAGCTTACAACCTCTGCTG
CTTCACCTTTGTTTCAAAATCTTTAAATGCAGCACAAAGGAAAACATTTATTGGCCTATC
ATAAGCAAGACACTACAAATATTATTTAAATCTCATGACCTTCACACAtattatccctac
tttacagaggaggaaactgaggctcagagactttatacaacttgctgaggtctcagagtt
cccgttgtggcgcactggttaatgaatccgactaagaaccatgaggttgcgggttcgatc
cctggccttgctcagtgggttaaggatttggtgttgctgtgagctgtggtgtgggttgaa
gacgcagctcggatcccgtgctgctgtggctctggATTGGCCGGTGATTAGACCC

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-415, gnl|bosTau2|chr5 (21753549-21753959)
               

               
               5-415, gnl|canFam2|chr27 (8031189-8030621)
               

               
               5-415, gnl|hg17|chr12 (48320341-48320927)
               

               
               5-415, gnl|Hg17|chr12 (48321067-48320661)
               

               
               5-415, gnl|loxAfr1|scaffold_143115 (4134-4742)
               

               
               5-415, gnl|mm7|chr15 (99298305-99298706)
               

               
               5-415, gnl|oryCun1|scaffold_186962 (10032-10538)
               

               
               5-415, gnl|panTro1|chr10 (49503795-49504381)
               

               
               5-415, gnl|rheMac2|chr11 (46781365-46781953)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-415, gnl|bosTau2|chr5 (21753549-21753959)
               

               
               5-415, gnl|canFam2|chr27 (8031189-8030621)
               

               
               5-415, gnl|hg17|chr12 (48320341-48320927)
               

               
               5-415, gnl|Hg17|chr12 (48321067-48320661)
               

               
               5-415, gnl|loxAfr1|scaffold_143115 (4134-4742)
               

               
               5-415, gnl|mm7|chr15 (99298305-99298706)
               

               
               5-415, gnl|oryCun1|scaffold_186962 (10032-10538)
               

               
               5-415, gnl|panTro1|chr10 (49503795-49504381)
               

               
               5-415, gnl|rheMac2|chr11 (46781365-46781953)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	5-415, gnl\|bosTau2\|chr5 (21753549-21753959)
	5-415, gnl\|canFam2\|chr27 (8031189-8030621)
	5-415, gnl\|hg17\|chr12 (48320341-48320927)
	5-415, gnl\|Hg17\|chr12 (48321067-48320661)
	5-415, gnl\|loxAfr1\|scaffold_143115 (4134-4742)
	5-415, gnl\|mm7\|chr15 (99298305-99298706)
	5-415, gnl\|oryCun1\|scaffold_186962 (10032-10538)
	5-415, gnl\|panTro1\|chr10 (49503795-49504381)
	5-415, gnl\|rheMac2\|chr11 (46781365-46781953)