Non-Coding RNA Search

rsme005_g18r1.y1

Sequence:


               
               ATACCCAGGATGACTATAATATCCATCTATAGATTTTATAATTAAATAAATCTTCTCTTT
TTCTGAGGAAATTATTTCCTATTTTAAAAAACGCATCATAATTCTTTATTATCTCTTCTT
TTTGCTCATTGCAGCTTCTCAGATAGCCTCCCGATTTTTCTTTCTTTTTTGCACAGGCAG
AGGAGTTCCACTTAAAATATAAATATACATTAGCCTAAAATTCCTTTAGAGGAAAAGAAA
TAGACCCAAGAGCTGAAGAATAACATTTTGCTTTGGTGATTTCTCAGAGAATGAGATGGG
TGAATGTCTTACTTTCATTCCACTCTCTTTTGAAAATGATTTCTTGGTTTGTAAAAGTGA
TATGGGTATGCAATTTCTTACAAATCATCTGAATGAATCATGAGTGGGCACAGAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCCAGGATGACTATAATATCCATCTATAGATTTTATAATTAAATAAATCTTCTCTTT
TTCTGAGGAAATTATTTCCTATTTTAAAAAACGCATCATAATTCTTTATTATCTCTTCTT
TTTGCTCATTGCAGCTTCTCAGATAGCCTCCCGATTTTTCTTTCTTTTTTGCACAGGCAG
AGGAGTTCCACTTAAAATATAAATATACATTAGCCTAAAATTCCTTTAGAGGAAAAGAAA
TAGACCCAAGAGCTGAAGAATAACATTTTGCTTTGGTGATTTCTCAGAGAATGAGATGGG
TGAATGTCTTACTTTCATTCCACTCTCTTTTGAAAATGATTTCTTGGTTTGTAAAAGTGA
TATGGGTATGCAATTTCTTACAAATCATCTGAATGAATCATGAGTGGGCACAGAGCTG

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               8-418, gnl|bosTau2|chr1 (72105766-72106169)
               

               
               8-418, gnl|canFam2|chr23 (52181278-52181767)
               

               
               8-418, gnl|dasNov1|scaffold_74483 (8447-7988)
               

               
               8-418, gnl|echTel1|scaffold_269351 (10612-10170)
               

               
               8-418, gnl|hg17|chr3 (156468891-156469345)
               

               
               8-418, gnl|Hg17|chr3 (156469344-156468978)
               

               
               8-418, gnl|loxAfr1|scaffold_80727 (5376-5839)
               

               
               8-418, gnl|mm7|chr3 (63612663-63613098)
               

               
               8-418, gnl|Mm7|chr3 (63613123-63612748)
               

               
               8-418, gnl|oryCun1|scaffold_117641 (5210-5670)
               

               
               8-418, gnl|panTro1|chr2 (159610796-159611250)
               

               
               8-418, gnl|rheMac2|chr2 (132407150-132406684)
               

               
               8-418, gnl|rn3|chr2 (153178433-153178886)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-418, gnl|bosTau2|chr1 (72105766-72106169)
               

               
               8-418, gnl|canFam2|chr23 (52181278-52181767)
               

               
               8-418, gnl|dasNov1|scaffold_74483 (8447-7988)
               

               
               8-418, gnl|echTel1|scaffold_269351 (10612-10170)
               

               
               8-418, gnl|hg17|chr3 (156468891-156469345)
               

               
               8-418, gnl|Hg17|chr3 (156469344-156468978)
               

               
               8-418, gnl|loxAfr1|scaffold_80727 (5376-5839)
               

               
               8-418, gnl|mm7|chr3 (63612663-63613098)
               

               
               8-418, gnl|Mm7|chr3 (63613123-63612748)
               

               
               8-418, gnl|oryCun1|scaffold_117641 (5210-5670)
               

               
               8-418, gnl|panTro1|chr2 (159610796-159611250)
               

               
               8-418, gnl|rheMac2|chr2 (132407150-132406684)
               

               
               8-418, gnl|rn3|chr2 (153178433-153178886)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sme (0.305437)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	8-418, gnl\|bosTau2\|chr1 (72105766-72106169)
	8-418, gnl\|canFam2\|chr23 (52181278-52181767)
	8-418, gnl\|dasNov1\|scaffold_74483 (8447-7988)
	8-418, gnl\|echTel1\|scaffold_269351 (10612-10170)
	8-418, gnl\|hg17\|chr3 (156468891-156469345)
	8-418, gnl\|Hg17\|chr3 (156469344-156468978)
	8-418, gnl\|loxAfr1\|scaffold_80727 (5376-5839)
	8-418, gnl\|mm7\|chr3 (63612663-63613098)
	8-418, gnl\|Mm7\|chr3 (63613123-63612748)
	8-418, gnl\|oryCun1\|scaffold_117641 (5210-5670)
	8-418, gnl\|panTro1\|chr2 (159610796-159611250)
	8-418, gnl\|rheMac2\|chr2 (132407150-132406684)
	8-418, gnl\|rn3\|chr2 (153178433-153178886)