Non-Coding RNA Search

rsme017_m4.y1

Sequence:


               
               GCGATCTCTAAGAAGAGCTGCCTGAGACCTTCAGACGTGGTCAGGTGCCTGAGCAGACGA
ACAGAGATTCCCAGAGCTCCACGCCCCGGAGGAGAGCTGGCCCCGCCGGCCGCTGGGTGG
CCCTCTCCCGGGAAGGGAGGCTGAGCACCCAGAGCTTCATAGAGGTGGCGAGCCGGCCAA
GAGGAAGGCCGCTCGGACGGGTGCGAGCCAGCCTTCTCATCATTCATTGAGAGCAGGACC
TGATCTCACAGAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATCTCTAAGAAGAGCTGCCTGAGACCTTCAGACGTGGTCAGGTGCCTGAGCAGACGA
ACAGAGATTCCCAGAGCTCCACGCCCCGGAGGAGAGCTGGCCCCGCCGGCCGCTGGGTGG
CCCTCTCCCGGGAAGGGAGGCTGAGCACCCAGAGCTTCATAGAGGTGGCGAGCCGGCCAA
GAGGAAGGCCGCTCGGACGGGTGCGAGCCAGCCTTCTCATCATTCATTGAGAGCAGGACC
TGATCTCACAGAGTCT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-178, gnl|bosTau2|chr26 (10870508-10870687)
               

               
               1-178, gnl|canFam2|chr28 (11854575-11854884)
               

               
               1-178, gnl|galGal2|chr6 (15671413-15671143)
               

               
               1-178, gnl|hg17|chr10 (97086249-97086559)
               

               
               1-178, gnl|Hg17|chr10 (97086477-97086289)
               

               
               1-178, gnl|mm7|chr19 (40203350-40203654)
               

               
               1-178, gnl|Mm7|chr19 (40203575-40203390)
               

               
               1-178, gnl|monDom2|scaffold_14 (27630768-27630461)
               

               
               1-178, gnl|oryCun1|scaffold_213007 (66996-67306)
               

               
               1-178, gnl|panTro1|chr8 (98723704-98724014)
               

               
               1-178, gnl|rheMac2|chr9 (94871056-94871366)
               

               
               1-178, gnl|rn3|chr1 (245533953-245534257)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-178, gnl|bosTau2|chr26 (10870508-10870687)
               

               
               1-178, gnl|canFam2|chr28 (11854575-11854884)
               

               
               1-178, gnl|galGal2|chr6 (15671413-15671143)
               

               
               1-178, gnl|hg17|chr10 (97086249-97086559)
               

               
               1-178, gnl|Hg17|chr10 (97086477-97086289)
               

               
               1-178, gnl|mm7|chr19 (40203350-40203654)
               

               
               1-178, gnl|Mm7|chr19 (40203575-40203390)
               

               
               1-178, gnl|monDom2|scaffold_14 (27630768-27630461)
               

               
               1-178, gnl|oryCun1|scaffold_213007 (66996-67306)
               

               
               1-178, gnl|panTro1|chr8 (98723704-98724014)
               

               
               1-178, gnl|rheMac2|chr9 (94871056-94871366)
               

               
               1-178, gnl|rn3|chr1 (245533953-245534257)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	1-178, gnl\|bosTau2\|chr26 (10870508-10870687)
	1-178, gnl\|canFam2\|chr28 (11854575-11854884)
	1-178, gnl\|galGal2\|chr6 (15671413-15671143)
	1-178, gnl\|hg17\|chr10 (97086249-97086559)
	1-178, gnl\|Hg17\|chr10 (97086477-97086289)
	1-178, gnl\|mm7\|chr19 (40203350-40203654)
	1-178, gnl\|Mm7\|chr19 (40203575-40203390)
	1-178, gnl\|monDom2\|scaffold_14 (27630768-27630461)
	1-178, gnl\|oryCun1\|scaffold_213007 (66996-67306)
	1-178, gnl\|panTro1\|chr8 (98723704-98724014)
	1-178, gnl\|rheMac2\|chr9 (94871056-94871366)
	1-178, gnl\|rn3\|chr1 (245533953-245534257)