Non-Coding RNA Search

rspc009_g9.y1

Sequence:


               
               CTAACTTACCAGCTCTGCCACACTTATGTGCGCTGTACACGATCTGTTTCTATACCTGCA
CCAGCGTATTATGCTCACCTGGTAGCATTTAGAGCCAGATATCATCTCGTGGACAAAGAG
CATGACAGTGCTGAAGGAAGTCATGTTTCAGGACAGAGCAACGGACGAGATCCACAAGCT
CTTGCCAAGGCTGTACAAATTCACCAAGATACCTTACGCACAATGTACTTTGCTTAAAAA
GTCTAAGAATATTCTCTGAAAGGAAGAACTGGAAGATGAATTTACATACAACTTATGTTT
CCAGTGAAGTCCATTGAGTGGGAATGCCTCCAGCCATACAGAAACCAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAACTTACCAGCTCTGCCACACTTATGTGCGCTGTACACGATCTGTTTCTATACCTGCA
CCAGCGTATTATGCTCACCTGGTAGCATTTAGAGCCAGATATCATCTCGTGGACAAAGAG
CATGACAGTGCTGAAGGAAGTCATGTTTCAGGACAGAGCAACGGACGAGATCCACAAGCT
CTTGCCAAGGCTGTACAAATTCACCAAGATACCTTACGCACAATGTACTTTGCTTAAAAA
GTCTAAGAATATTCTCTGAAAGGAAGAACTGGAAGATGAATTTACATACAACTTATGTTT
CCAGTGAAGTCCATTGAGTGGGAATGCCTCCAGCCATACAGAAACCAACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.514852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.514852

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-128, gnl|bosTau2|chr3 (76821251-76821124)
               

               
               1-128, gnl|canFam2|chr15 (9157214-9157006)
               

               
               1-128, gnl|danRer3|chr16 (52138866-52138660)
               

               
               1-128, gnl|dasNov1|scaffold_167241 (3688-3480)
               

               
               1-128, gnl|echTel1|scaffold_309565 (127983-128191)
               

               
               1-128, gnl|fr1|chrUn (110355717-110355509)
               

               
               1-128, gnl|galGal2|chr23 (3681200-3680992)
               

               
               1-128, gnl|hg17|chr1 (36189636-36189844)
               

               
               1-128, gnl|Hg17|chr1 (36189712-36189839)
               

               
               1-128, gnl|loxAfr1|scaffold_111481 (1211-1419)
               

               
               1-128, gnl|mm7|chr4 (125791483-125791275)
               

               
               1-128, gnl|Mm7|chr4 (125791405-125791278)
               

               
               1-128, gnl|monDom2|scaffold_43 (14203172-14202965)
               

               
               1-128, gnl|oryCun1|scaffold_83112 (6047-6250)
               

               
               1-128, gnl|panTro1|chr1 (37020871-37021079)
               

               
               1-128, gnl|rheMac2|chr1 (38893986-38894194)
               

               
               1-128, gnl|rn3|chr5 (145724803-145724595)
               

               
               1-128, gnl|tetNig1|chrUn_random (22524680-22524472)
               

               
               1-128, gnl|xenTro1|scaffold_163 (164251-164459)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr3 (76821251-76821124)
               

               
               1-128, gnl|canFam2|chr15 (9157214-9157006)
               

               
               1-128, gnl|danRer3|chr16 (52138866-52138660)
               

               
               1-128, gnl|dasNov1|scaffold_167241 (3688-3480)
               

               
               1-128, gnl|echTel1|scaffold_309565 (127983-128191)
               

               
               1-128, gnl|fr1|chrUn (110355717-110355509)
               

               
               1-128, gnl|galGal2|chr23 (3681200-3680992)
               

               
               1-128, gnl|hg17|chr1 (36189636-36189844)
               

               
               1-128, gnl|Hg17|chr1 (36189712-36189839)
               

               
               1-128, gnl|loxAfr1|scaffold_111481 (1211-1419)
               

               
               1-128, gnl|mm7|chr4 (125791483-125791275)
               

               
               1-128, gnl|Mm7|chr4 (125791405-125791278)
               

               
               1-128, gnl|monDom2|scaffold_43 (14203172-14202965)
               

               
               1-128, gnl|oryCun1|scaffold_83112 (6047-6250)
               

               
               1-128, gnl|panTro1|chr1 (37020871-37021079)
               

               
               1-128, gnl|rheMac2|chr1 (38893986-38894194)
               

               
               1-128, gnl|rn3|chr5 (145724803-145724595)
               

               
               1-128, gnl|tetNig1|chrUn_random (22524680-22524472)
               

               
               1-128, gnl|xenTro1|scaffold_163 (164251-164459)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-128, gnl\|bosTau2\|chr3 (76821251-76821124)
	1-128, gnl\|canFam2\|chr15 (9157214-9157006)
	1-128, gnl\|danRer3\|chr16 (52138866-52138660)
	1-128, gnl\|dasNov1\|scaffold_167241 (3688-3480)
	1-128, gnl\|echTel1\|scaffold_309565 (127983-128191)
	1-128, gnl\|fr1\|chrUn (110355717-110355509)
	1-128, gnl\|galGal2\|chr23 (3681200-3680992)
	1-128, gnl\|hg17\|chr1 (36189636-36189844)
	1-128, gnl\|Hg17\|chr1 (36189712-36189839)
	1-128, gnl\|loxAfr1\|scaffold_111481 (1211-1419)
	1-128, gnl\|mm7\|chr4 (125791483-125791275)
	1-128, gnl\|Mm7\|chr4 (125791405-125791278)
	1-128, gnl\|monDom2\|scaffold_43 (14203172-14202965)
	1-128, gnl\|oryCun1\|scaffold_83112 (6047-6250)
	1-128, gnl\|panTro1\|chr1 (37020871-37021079)
	1-128, gnl\|rheMac2\|chr1 (38893986-38894194)
	1-128, gnl\|rn3\|chr5 (145724803-145724595)
	1-128, gnl\|tetNig1\|chrUn_random (22524680-22524472)
	1-128, gnl\|xenTro1\|scaffold_163 (164251-164459)