Non-Coding RNA Search

rspc011_g2.y1

Sequence:


               
               CGACTTTGAACATCTGGGGGAGCTCTACTAAGAAAGAAAGTCTGAATTTGAATCTTACGG
AGTCAATGGCGCTAAATTAACACAAAATTTTTAAATGGATTTAGTAGAATCCCATTATTA
GGGGAAATCACTTTGCAGAGCCATATACTGGGGAATAGTCAAGCACCACATGTTGGTTTT
GGAATGTGCATTTCGCAAGGGTAATAGAATTTACTTCATCAAAAAAGATTTTTTTGCACA
ATTCACAATACTTACAGAAATATGACTGTATCATTGGAGGGAAAAAACTCACCTCCCTAA
TGATACATTTCACATACACTGGTAAACTAGTGCAATTCCTTATTTATTTGGGGTGGATAC
AAAACAATAATCTGTCCATAGACTATAACTGCTTATTCCTAACTGTATTTAGAAATGAAT
ACATACTATGAATGTACTATTGAATGTTGAAGAACTGCTCAATAAATTAGTATTAATAAA
AAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTTTGAACATCTGGGGGAGCTCTACTAAGAAAGAAAGTCTGAATTTGAATCTTACGG
AGTCAATGGCGCTAAATTAACACAAAATTTTTAAATGGATTTAGTAGAATCCCATTATTA
GGGGAAATCACTTTGCAGAGCCATATACTGGGGAATAGTCAAGCACCACATGTTGGTTTT
GGAATGTGCATTTCGCAAGGGTAATAGAATTTACTTCATCAAAAAAGATTTTTTTGCACA
ATTCACAATACTTACAGAAATATGACTGTATCATTGGAGGGAAAAAACTCACCTCCCTAA
TGATACATTTCACATACACTGGTAAACTAGTGCAATTCCTTATTTATTTGGGGTGGATAC
AAAACAATAATCTGTCCATAGACTATAACTGCTTATTCCTAACTGTATTTAGAAATGAAT
ACATACTATGAATGTACTATTGAATGTTGAAGAACTGCTCAATAAATTAGTATTAATAAA
AAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               311-429, - strand, RNAz p=0.693691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-429, - strand, RNAz p=0.693691

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-429, gnl|bosTau2|chrX (34477142-34476724)
               

               
               5-429, gnl|canFam2|chrX (32400630-32400991)
               

               
               5-429, gnl|dasNov1|scaffold_4308 (9568-9920)
               

               
               5-429, gnl|echTel1|scaffold_318960 (124084-124437)
               

               
               5-429, gnl|hg17|chrX (37298338-37298704)
               

               
               5-429, gnl|Hg17|chrX (37298355-37298770)
               

               
               5-429, gnl|mm7|chrX (7702748-7703086)
               

               
               5-429, gnl|Mm7|chrX (7702765-7703159)
               

               
               5-429, gnl|monDom2|scaffold_29 (27384517-27384057)
               

               
               5-429, gnl|oryCun1|scaffold_198465 (76781-76419)
               

               
               5-429, gnl|panTro1|chrX (38404845-38405211)
               

               
               5-429, gnl|rheMac2|chrX (35443824-35444192)
               

               
               5-429, gnl|rn3|chrX (25681669-25681330)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-429, gnl|bosTau2|chrX (34477142-34476724)
               

               
               5-429, gnl|canFam2|chrX (32400630-32400991)
               

               
               5-429, gnl|dasNov1|scaffold_4308 (9568-9920)
               

               
               5-429, gnl|echTel1|scaffold_318960 (124084-124437)
               

               
               5-429, gnl|hg17|chrX (37298338-37298704)
               

               
               5-429, gnl|Hg17|chrX (37298355-37298770)
               

               
               5-429, gnl|mm7|chrX (7702748-7703086)
               

               
               5-429, gnl|Mm7|chrX (7702765-7703159)
               

               
               5-429, gnl|monDom2|scaffold_29 (27384517-27384057)
               

               
               5-429, gnl|oryCun1|scaffold_198465 (76781-76419)
               

               
               5-429, gnl|panTro1|chrX (38404845-38405211)
               

               
               5-429, gnl|rheMac2|chrX (35443824-35444192)
               

               
               5-429, gnl|rn3|chrX (25681669-25681330)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	5-429, gnl\|bosTau2\|chrX (34477142-34476724)
	5-429, gnl\|canFam2\|chrX (32400630-32400991)
	5-429, gnl\|dasNov1\|scaffold_4308 (9568-9920)
	5-429, gnl\|echTel1\|scaffold_318960 (124084-124437)
	5-429, gnl\|hg17\|chrX (37298338-37298704)
	5-429, gnl\|Hg17\|chrX (37298355-37298770)
	5-429, gnl\|mm7\|chrX (7702748-7703086)
	5-429, gnl\|Mm7\|chrX (7702765-7703159)
	5-429, gnl\|monDom2\|scaffold_29 (27384517-27384057)
	5-429, gnl\|oryCun1\|scaffold_198465 (76781-76419)
	5-429, gnl\|panTro1\|chrX (38404845-38405211)
	5-429, gnl\|rheMac2\|chrX (35443824-35444192)
	5-429, gnl\|rn3\|chrX (25681669-25681330)