rspc011_i8.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGGCTTCATGTACGGCAACATCTTTGAGGATGAGGAGCGCTTCCAGAGGCAGGCCGTC TTCCCCAAGCTCCTCTGCCAGAATGCCGAGGACTTCTCCTACTCCAGCACATCCTTCAAC CGGGATGCCGTGAAAGCAGGAACTGGCCGTCGCTTCCTCGGTGGGCTGCTGGACCACACC TCCTACTGCTACACATTGGAGGTTTCCTTCTACAGCTACATCCTCGGTGGCACCACGGAT GCTGTGCCCTACACGGAGGAAGCCTATATGAAGCTGGGGCGGAACGTGGCAAGAACGTTT TTGGATTATTACCGGCTGAACCCAATGGTCGAGAAAGTGGCAATCCCCATGCCAAGGCTG CGACCTGATGCTGAACCAGAGGCCTCTGGAGAGATGAGACCAGCAGGTGACACAGCAAAC CTTGCATACAGAAGGTGCAGTGCTGCGGACCTAATTTACACCACCGTGTAACAGATTCCA TGGAGCCTGTGCGAGCTGCTAGACAGACTCAATAAAGCAATGTTTTATCTTCAAAAAAAA AAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGGCTTCATGTACGGCAACATCTTTGAGGATGAGGAGCGCTTCCAGAGGCAGGCCGTC TTCCCCAAGCTCCTCTGCCAGAATGCCGAGGACTTCTCCTACTCCAGCACATCCTTCAAC CGGGATGCCGTGAAAGCAGGAACTGGCCGTCGCTTCCTCGGTGGGCTGCTGGACCACACC TCCTACTGCTACACATTGGAGGTTTCCTTCTACAGCTACATCCTCGGTGGCACCACGGAT GCTGTGCCCTACACGGAGGAAGCCTATATGAAGCTGGGGCGGAACGTGGCAAGAACGTTT TTGGATTATTACCGGCTGAACCCAATGGTCGAGAAAGTGGCAATCCCCATGCCAAGGCTG CGACCTGATGCTGAACCAGAGGCCTCTGGAGAGATGAGACCAGCAGGTGACACAGCAAAC CTTGCATACAGAAGGTGCAGTGCTGCGGACCTAATTTACACCACCGTGTAACAGATTCCA TGGAGCCTGTGCGAGCTGCTAGACAGACTCAATAAAGCAATGTTTTATCTTCAAAAAAAA AAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 151-269, - strand, RNAz p=0.773921 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 151-269, - strand, RNAz p=0.773921 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 95-269, gnl|bosTau2|chr3 (69784799-69784973) | |
| 95-269, gnl|canFam2|chr15 (15385707-15385506) | |
| 95-269, gnl|danRer3|chr8 (8172283-8172462) | |
| 95-269, gnl|echTel1|scaffold_317820 (43882-43685) | |
| 95-269, gnl|fr1|chrUn (47948255-47948445) | |
| 95-269, gnl|galGal2|chr8 (23016060-23016261) | |
| 95-269, gnl|hg17|chr1 (48764683-48764880) | |
| 95-269, gnl|Hg17|chr1 (48764866-48764692) | |
| 95-269, gnl|loxAfr1|scaffold_103938 (742-942) | |
| 95-269, gnl|mm7|chr4 (110993740-110993539) | |
| 95-269, gnl|Mm7|chr4 (110993551-110993725) | |
| 95-269, gnl|monDom2|scaffold_70 (4321610-4321418) | |
| 95-269, gnl|oryCun1|scaffold_128012 (12531-12336) | |
| 95-269, gnl|panTro1|chr1 (46981305-46981502) | |
| 95-269, gnl|rheMac2|chr1 (51464520-51464721) | |
| 95-269, gnl|rn3|chr5 (133151356-133151155) | |
| 95-269, gnl|tetNig1|chr1 (10691552-10691725) | |
| 95-269, gnl|xenTro1|scaffold_14 (937914-937717) | |
| 362-531, gnl|bosTau2|chr3 (69843509-69843678) | |
| 362-531, gnl|canFam2|chr15 (15440504-15440202) | |
| 362-531, gnl|dasNov1|scaffold_7115 (82079-81780) | |
| 362-531, gnl|echTel1|scaffold_276610 (44433-44132) | |
| 362-531, gnl|hg17|chr1 (48700137-48700440) | |
| 362-531, gnl|Hg17|chr1 (48700385-48700216) | |
| 362-531, gnl|mm7|chr4 (111052985-111052712) | |
| 362-531, gnl|Mm7|chr4 (111052745-111052907) | |
| 362-531, gnl|oryCun1|scaffold_202734 (106599-106858) | |
| 362-531, gnl|rheMac2|chr1 (51397036-51397339) | |
| 362-531, gnl|rn3|chr5 (133221329-133221065) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-269, gnl|bosTau2|chr3 (69784799-69784973) | |
| 95-269, gnl|canFam2|chr15 (15385707-15385506) | |
| 95-269, gnl|danRer3|chr8 (8172283-8172462) | |
| 95-269, gnl|echTel1|scaffold_317820 (43882-43685) | |
| 95-269, gnl|fr1|chrUn (47948255-47948445) | |
| 95-269, gnl|galGal2|chr8 (23016060-23016261) | |
| 95-269, gnl|hg17|chr1 (48764683-48764880) | |
| 95-269, gnl|Hg17|chr1 (48764866-48764692) | |
| 95-269, gnl|loxAfr1|scaffold_103938 (742-942) | |
| 95-269, gnl|mm7|chr4 (110993740-110993539) | |
| 95-269, gnl|Mm7|chr4 (110993551-110993725) | |
| 95-269, gnl|monDom2|scaffold_70 (4321610-4321418) | |
| 95-269, gnl|oryCun1|scaffold_128012 (12531-12336) | |
| 95-269, gnl|panTro1|chr1 (46981305-46981502) | |
| 95-269, gnl|rheMac2|chr1 (51464520-51464721) | |
| 95-269, gnl|rn3|chr5 (133151356-133151155) | |
| 95-269, gnl|tetNig1|chr1 (10691552-10691725) | |
| 95-269, gnl|xenTro1|scaffold_14 (937914-937717) | |
| 362-531, gnl|bosTau2|chr3 (69843509-69843678) | |
| 362-531, gnl|canFam2|chr15 (15440504-15440202) | |
| 362-531, gnl|dasNov1|scaffold_7115 (82079-81780) | |
| 362-531, gnl|echTel1|scaffold_276610 (44433-44132) | |
| 362-531, gnl|hg17|chr1 (48700137-48700440) | |
| 362-531, gnl|Hg17|chr1 (48700385-48700216) | |
| 362-531, gnl|mm7|chr4 (111052985-111052712) | |
| 362-531, gnl|Mm7|chr4 (111052745-111052907) | |
| 362-531, gnl|oryCun1|scaffold_202734 (106599-106858) | |
| 362-531, gnl|rheMac2|chr1 (51397036-51397339) | |
| 362-531, gnl|rn3|chr5 (133221329-133221065) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.113366) |