Non-Coding RNA Search

rspc013_l24.y1

Sequence:


               
               GGTTTTTTTTTCTCTTGTACTTTCTTTATTTGTGGAACAAATTACATTATAAAACTAGCC
CCTTTTCACTTCCTGCCAGGATGGTGGTGGCCAGAAACCAAAAAAGAGAATCAAACCTCT
ATTCTCTGTGTGTGCAGCAGGCCATGGGGGTCCAAGGGCTTATTAGTGACTCCATCACTT
CCATCCATCATTCTCTGTGCACCACGGCGTTCACAACAGCCAGGAGAACTTGCTCAGAAG
TCCCAGAAGGTCACTTTTCCACATCTTCTCAGTCAAAGTAGTTACAGATGCAGTGTAGTT
TCCAATATGAGAGGAGCTGCATATACATACAGAGCAGAATGGAGCAGAGTGGACCATCTT
TAGAGACTCTCTTTCCCAGGACAAGGGCCAGGATTCATGTATTCTTCTCCATTTGTAGCA
GGAAAACTCATTTGTGCTGAATTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTTTTTTTCTCTTGTACTTTCTTTATTTGTGGAACAAATTACATTATAAAACTAGCC
CCTTTTCACTTCCTGCCAGGATGGTGGTGGCCAGAAACCAAAAAAGAGAATCAAACCTCT
ATTCTCTGTGTGTGCAGCAGGCCATGGGGGTCCAAGGGCTTATTAGTGACTCCATCACTT
CCATCCATCATTCTCTGTGCACCACGGCGTTCACAACAGCCAGGAGAACTTGCTCAGAAG
TCCCAGAAGGTCACTTTTCCACATCTTCTCAGTCAAAGTAGTTACAGATGCAGTGTAGTT
TCCAATATGAGAGGAGCTGCATATACATACAGAGCAGAATGGAGCAGAGTGGACCATCTT
TAGAGACTCTCTTTCCCAGGACAAGGGCCAGGATTCATGTATTCTTCTCCATTTGTAGCA
GGAAAACTCATTTGTGCTGAATTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               51-158, + strand, RNAz p=0.615279

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-158, + strand, RNAz p=0.615279

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               11-231, gnl|bosTau2|chr24 (12606219-12605999)
               

               
               11-231, gnl|canFam2|chr7 (53271631-53271384)
               

               
               11-231, gnl|dasNov1|scaffold_5886 (3958-3707)
               

               
               11-231, gnl|echTel1|scaffold_299541 (15091-15328)
               

               
               11-231, gnl|hg17|chr18 (36183872-36184126)
               

               
               11-231, gnl|Hg17|chr18 (36184188-36183958)
               

               
               11-231, gnl|loxAfr1|scaffold_14025 (36409-36156)
               

               
               11-231, gnl|mm7|chr18 (29055028-29055281)
               

               
               11-231, gnl|Mm7|chr18 (29055330-29055114)
               

               
               11-231, gnl|monDom2|scaffold_4 (5128713-5128458)
               

               
               11-231, gnl|oryCun1|scaffold_185073 (3231-3485)
               

               
               11-231, gnl|panTro1|chr17 (32363818-32364071)
               

               
               11-231, gnl|rheMac2|chr18 (33322415-33322670)
               

               
               11-231, gnl|rn3|chr18 (20780599-20780852)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-231, gnl|bosTau2|chr24 (12606219-12605999)
               

               
               11-231, gnl|canFam2|chr7 (53271631-53271384)
               

               
               11-231, gnl|dasNov1|scaffold_5886 (3958-3707)
               

               
               11-231, gnl|echTel1|scaffold_299541 (15091-15328)
               

               
               11-231, gnl|hg17|chr18 (36183872-36184126)
               

               
               11-231, gnl|Hg17|chr18 (36184188-36183958)
               

               
               11-231, gnl|loxAfr1|scaffold_14025 (36409-36156)
               

               
               11-231, gnl|mm7|chr18 (29055028-29055281)
               

               
               11-231, gnl|Mm7|chr18 (29055330-29055114)
               

               
               11-231, gnl|monDom2|scaffold_4 (5128713-5128458)
               

               
               11-231, gnl|oryCun1|scaffold_185073 (3231-3485)
               

               
               11-231, gnl|panTro1|chr17 (32363818-32364071)
               

               
               11-231, gnl|rheMac2|chr18 (33322415-33322670)
               

               
               11-231, gnl|rn3|chr18 (20780599-20780852)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	11-231, gnl\|bosTau2\|chr24 (12606219-12605999)
	11-231, gnl\|canFam2\|chr7 (53271631-53271384)
	11-231, gnl\|dasNov1\|scaffold_5886 (3958-3707)
	11-231, gnl\|echTel1\|scaffold_299541 (15091-15328)
	11-231, gnl\|hg17\|chr18 (36183872-36184126)
	11-231, gnl\|Hg17\|chr18 (36184188-36183958)
	11-231, gnl\|loxAfr1\|scaffold_14025 (36409-36156)
	11-231, gnl\|mm7\|chr18 (29055028-29055281)
	11-231, gnl\|Mm7\|chr18 (29055330-29055114)
	11-231, gnl\|monDom2\|scaffold_4 (5128713-5128458)
	11-231, gnl\|oryCun1\|scaffold_185073 (3231-3485)
	11-231, gnl\|panTro1\|chr17 (32363818-32364071)
	11-231, gnl\|rheMac2\|chr18 (33322415-33322670)
	11-231, gnl\|rn3\|chr18 (20780599-20780852)