Non-Coding RNA Search

rspc014_c5.y1

Sequence:


               
               ATCCCACAAAATACAGATAGAAAAGTTTCCTTCAATTTGCTTTTAAAATAGTGCTTGAAT
AACAAACCTTTGTTGGTGACTAGTCTTTTTTTGGGTATCTCCCCATCATTAAAAATTGTT
CAAGTTTTTTATCTCGTTTTACTGTGTTCCACTCTGTCTATTTTCTCTCAAAATTAGTTT
GATCTCATTGTAGAAAAAGCAACGGTTTCCATAGCTTCATCTATCAGAGGAAATAAAACT
CTTACTAAAGAATAGTGTACTGCATCTCTAAGCAGTAGAAGGTAAACTACCTGCAAATGT
GAATTTCTTAGTTTCATTAAAAAATATAGAGTTGTTAACCTTCCGTGTGCCAAAAATTCT
AGGTTACATTTTCCTTCAAAGCAATGTACTTTTTTCTACATATGCAGTATGTAGTTAGCA
TAAAATCATTGGTGCCATGAAAATTATTTTTAAAATTAAATAAATATTTAAATATCAAAA
AAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCACAAAATACAGATAGAAAAGTTTCCTTCAATTTGCTTTTAAAATAGTGCTTGAAT
AACAAACCTTTGTTGGTGACTAGTCTTTTTTTGGGTATCTCCCCATCATTAAAAATTGTT
CAAGTTTTTTATCTCGTTTTACTGTGTTCCACTCTGTCTATTTTCTCTCAAAATTAGTTT
GATCTCATTGTAGAAAAAGCAACGGTTTCCATAGCTTCATCTATCAGAGGAAATAAAACT
CTTACTAAAGAATAGTGTACTGCATCTCTAAGCAGTAGAAGGTAAACTACCTGCAAATGT
GAATTTCTTAGTTTCATTAAAAAATATAGAGTTGTTAACCTTCCGTGTGCCAAAAATTCT
AGGTTACATTTTCCTTCAAAGCAATGTACTTTTTTCTACATATGCAGTATGTAGTTAGCA
TAAAATCATTGGTGCCATGAAAATTATTTTTAAAATTAAATAAATATTTAAATATCAAAA
AAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-305, - strand, RNAz p=0.509754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-305, - strand, RNAz p=0.509754

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               175-274, - strand, RNAmicro p=0.999817

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               175-274, - strand, RNAmicro p=0.999817

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-482, gnl|bosTau2|chr21 (34600344-34599862)
               

               
               3-482, gnl|Hg17|chr15 (41950728-41950250)
               

               
               3-482, gnl|Mm7|chr2 (121286846-121286382)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-482, gnl|bosTau2|chr21 (34600344-34599862)
               

               
               3-482, gnl|Hg17|chr15 (41950728-41950250)
               

               
               3-482, gnl|Mm7|chr2 (121286846-121286382)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	3-482, gnl\|bosTau2\|chr21 (34600344-34599862)
	3-482, gnl\|Hg17\|chr15 (41950728-41950250)
	3-482, gnl\|Mm7\|chr2 (121286846-121286382)