Non-Coding RNA Search

rspc022_o11.y1

Sequence:


               
               GGCTGGAAAAACAGTGATGACATTGATAAACAGTATCGGAAGGAAGCCTACCGATACTGT
GCAGAGAGAAAGAGGTGGATGCTTCTTCCTCCCATGCCACAGCCTCGTTGTAGAGCCACT
GCCTGCCACGTGAGAATTCCATACCGGTACTTGCATGGCACTCAGAGATATCCCATGCCT
CAAAACTTAATGTGGCAGAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGAAAAACAGTGATGACATTGATAAACAGTATCGGAAGGAAGCCTACCGATACTGT
GCAGAGAGAAAGAGGTGGATGCTTCTTCCTCCCATGCCACAGCCTCGTTGTAGAGCCACT
GCCTGCCACGTGAGAATTCCATACCGGTACTTGCATGGCACTCAGAGATATCCCATGCCT
CAAAACTTAATGTGGCAGAAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-203, - strand, RNAz p=0.925008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-203, - strand, RNAz p=0.925008

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1-154, - strand, RNAmicro p=0.973648

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1-154, - strand, RNAmicro p=0.973648

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-203, gnl|bosTau2|chr23 (116397-116599)
               

               
               1-203, gnl|canFam2|chr9 (24299486-24299216)
               

               
               1-203, gnl|danRer3|chr12 (16383362-16383099)
               

               
               1-203, gnl|dasNov1|scaffold_2391 (83454-83187)
               

               
               1-203, gnl|echTel1|scaffold_312412 (44177-44447)
               

               
               1-203, gnl|fr1|chrUn (96658080-96658352)
               

               
               1-203, gnl|galGal2|chr27_random (468554-468269)
               

               
               1-203, gnl|hg17|chr17 (37263507-37263777)
               

               
               1-203, gnl|Hg17|chr17 (37263799-37263597)
               

               
               1-203, gnl|loxAfr1|scaffold_90240 (3326-3596)
               

               
               1-203, gnl|mm7|chr11 (100571892-100572162)
               

               
               1-203, gnl|Mm7|chr11 (100572184-100571982)
               

               
               1-203, gnl|monDom2|scaffold_18 (52131836-52132099)
               

               
               1-203, gnl|oryCun1|scaffold_61691 (1547-1817)
               

               
               1-203, gnl|panTro1|chr19 (40463735-40464005)
               

               
               1-203, gnl|rheMac2|chr16 (51952778-51953048)
               

               
               1-203, gnl|rn3|chr10 (89421994-89422264)
               

               
               1-203, gnl|xenTro1|scaffold_394 (779152-779415)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr23 (116397-116599)
               

               
               1-203, gnl|canFam2|chr9 (24299486-24299216)
               

               
               1-203, gnl|danRer3|chr12 (16383362-16383099)
               

               
               1-203, gnl|dasNov1|scaffold_2391 (83454-83187)
               

               
               1-203, gnl|echTel1|scaffold_312412 (44177-44447)
               

               
               1-203, gnl|fr1|chrUn (96658080-96658352)
               

               
               1-203, gnl|galGal2|chr27_random (468554-468269)
               

               
               1-203, gnl|hg17|chr17 (37263507-37263777)
               

               
               1-203, gnl|Hg17|chr17 (37263799-37263597)
               

               
               1-203, gnl|loxAfr1|scaffold_90240 (3326-3596)
               

               
               1-203, gnl|mm7|chr11 (100571892-100572162)
               

               
               1-203, gnl|Mm7|chr11 (100572184-100571982)
               

               
               1-203, gnl|monDom2|scaffold_18 (52131836-52132099)
               

               
               1-203, gnl|oryCun1|scaffold_61691 (1547-1817)
               

               
               1-203, gnl|panTro1|chr19 (40463735-40464005)
               

               
               1-203, gnl|rheMac2|chr16 (51952778-51953048)
               

               
               1-203, gnl|rn3|chr10 (89421994-89422264)
               

               
               1-203, gnl|xenTro1|scaffold_394 (779152-779415)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-203, gnl\|bosTau2\|chr23 (116397-116599)
	1-203, gnl\|canFam2\|chr9 (24299486-24299216)
	1-203, gnl\|danRer3\|chr12 (16383362-16383099)
	1-203, gnl\|dasNov1\|scaffold_2391 (83454-83187)
	1-203, gnl\|echTel1\|scaffold_312412 (44177-44447)
	1-203, gnl\|fr1\|chrUn (96658080-96658352)
	1-203, gnl\|galGal2\|chr27_random (468554-468269)
	1-203, gnl\|hg17\|chr17 (37263507-37263777)
	1-203, gnl\|Hg17\|chr17 (37263799-37263597)
	1-203, gnl\|loxAfr1\|scaffold_90240 (3326-3596)
	1-203, gnl\|mm7\|chr11 (100571892-100572162)
	1-203, gnl\|Mm7\|chr11 (100572184-100571982)
	1-203, gnl\|monDom2\|scaffold_18 (52131836-52132099)
	1-203, gnl\|oryCun1\|scaffold_61691 (1547-1817)
	1-203, gnl\|panTro1\|chr19 (40463735-40464005)
	1-203, gnl\|rheMac2\|chr16 (51952778-51953048)
	1-203, gnl\|rn3\|chr10 (89421994-89422264)
	1-203, gnl\|xenTro1\|scaffold_394 (779152-779415)