Non-Coding RNA Search

rspc031_e10.y1

Sequence:


               
               GGCTGCTGTAGTCATCTATAGCTTCGAATTAAGAATCTCTCTTTAAAAATGGGTTAAAGA
ACAAAAGAATTTAAAATGCAAGTTAATCTTTTTATGATTAACAAGCATCCTCACGAAGAG
CTATAACTATATGTGCCATCATCCAGGAGACCTCAACTGCCTGCTAATGAGGATTGTGCT
TATAAGATCGTTTTCCTTGTCAGCTCTACTTCTTCTACTCTCCGTGTGCCTGCATCTAGA
AGGACAATGATATGACAAAAATCTCTAATCTTACGGAAATAGATCAGACAAGACTGTGAA
AGAAAAATCAAATGGGAATAAGAATAGAAAAAAGCTATTCAAATGGAAAAGTCCTGCCTT
ATAATGAGAAGCAGCATGATATGATGAAAGGAGCTCAAGTTTTGCAGTTAAATAGATCAT
CTCATTTTATGGGCAGTGCAATGGAGGATTAATAAGATGAAGTAACTTGTCACAGTCATA
CTGCTGAATATCAGCTCTCTGAAGACATACAAAACATCTCTCACTCATGGATATATCCCC
AGCACCTAGTGGAGTGTCTCACACATGAAAGATGTTCCATAAATTTGGGTATGTCTAACT
TGATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCTGTAGTCATCTATAGCTTCGAATTAAGAATCTCTCTTTAAAAATGGGTTAAAGA
ACAAAAGAATTTAAAATGCAAGTTAATCTTTTTATGATTAACAAGCATCCTCACGAAGAG
CTATAACTATATGTGCCATCATCCAGGAGACCTCAACTGCCTGCTAATGAGGATTGTGCT
TATAAGATCGTTTTCCTTGTCAGCTCTACTTCTTCTACTCTCCGTGTGCCTGCATCTAGA
AGGACAATGATATGACAAAAATCTCTAATCTTACGGAAATAGATCAGACAAGACTGTGAA
AGAAAAATCAAATGGGAATAAGAATAGAAAAAAGCTATTCAAATGGAAAAGTCCTGCCTT
ATAATGAGAAGCAGCATGATATGATGAAAGGAGCTCAAGTTTTGCAGTTAAATAGATCAT
CTCATTTTATGGGCAGTGCAATGGAGGATTAATAAGATGAAGTAACTTGTCACAGTCATA
CTGCTGAATATCAGCTCTCTGAAGACATACAAAACATCTCTCACTCATGGATATATCCCC
AGCACCTAGTGGAGTGTCTCACACATGAAAGATGTTCCATAAATTTGGGTATGTCTAACT
TGATTC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               66-253, gnl|bosTau2|chr9 (35756383-35756567)
               


               
               333-486, gnl|bosTau2|chr9 (35734996-35734845)
               

               
               333-486, gnl|canFam2|chr12 (47964146-47964422)
               

               
               333-486, gnl|dasNov1|scaffold_47984 (4835-5122)
               

               
               333-486, gnl|echTel1|scaffold_312509 (44460-44188)
               

               
               333-486, gnl|hg17|chr6 (85563874-85564120)
               

               
               333-486, gnl|mm7|chr9 (87862258-87862535)
               

               
               333-486, gnl|Mm7|chr9 (87862361-87862509)
               

               
               333-486, gnl|panTro1|chr5 (87277028-87277274)
               

               
               333-486, gnl|rheMac2|chr4 (80814479-80814725)
               

               
               333-486, gnl|rn3|chr8 (93061746-93062018)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-253, gnl|bosTau2|chr9 (35756383-35756567)
               


               
               333-486, gnl|bosTau2|chr9 (35734996-35734845)
               

               
               333-486, gnl|canFam2|chr12 (47964146-47964422)
               

               
               333-486, gnl|dasNov1|scaffold_47984 (4835-5122)
               

               
               333-486, gnl|echTel1|scaffold_312509 (44460-44188)
               

               
               333-486, gnl|hg17|chr6 (85563874-85564120)
               

               
               333-486, gnl|mm7|chr9 (87862258-87862535)
               

               
               333-486, gnl|Mm7|chr9 (87862361-87862509)
               

               
               333-486, gnl|panTro1|chr5 (87277028-87277274)
               

               
               333-486, gnl|rheMac2|chr4 (80814479-80814725)
               

               
               333-486, gnl|rn3|chr8 (93061746-93062018)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.113366)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	66-253, gnl\|bosTau2\|chr9 (35756383-35756567)

	333-486, gnl\|bosTau2\|chr9 (35734996-35734845)
	333-486, gnl\|canFam2\|chr12 (47964146-47964422)
	333-486, gnl\|dasNov1\|scaffold_47984 (4835-5122)
	333-486, gnl\|echTel1\|scaffold_312509 (44460-44188)
	333-486, gnl\|hg17\|chr6 (85563874-85564120)
	333-486, gnl\|mm7\|chr9 (87862258-87862535)
	333-486, gnl\|Mm7\|chr9 (87862361-87862509)
	333-486, gnl\|panTro1\|chr5 (87277028-87277274)
	333-486, gnl\|rheMac2\|chr4 (80814479-80814725)
	333-486, gnl\|rn3\|chr8 (93061746-93062018)