Non-Coding RNA Search

rspc032_c2.y1

Sequence:


               
               GAGAGATCACCCAGCTACCTGCTCAGCTCTTCGGCAGTGCGCATGACGTCCCTGAAAAGC
AACGCTAAGAACATCGTGACCAATTCTGTAGTACCAAATGGGCACAGCGTGAAACAGGAA
ATGGCACTGTGATTTTGGCCATTCAGCTCACTACTTGAAAAGAGCATACTCTTCTATCTC
TATTGCATAGAGCAGAACTGAACAATTTTCTTTCTTACTGTATCTCAACTAATTCATTAC
GTGATTTCACGACTGACTCAGAAAAGGCAAAATAAACAGAGCTAATATTTTTCTCTGAAC
CAAATTTTACAAGACATTTAAAAAAATGTATTACATTAAATGCTTCAAAAAGCAATTCTA
TGTGTATAAATCAATATTGTTTCAACATCCAAGTTGTTCCTAGAGACAACTCCAGTGTAT
TTATCTTAAATTTGTATTATCTTGGAGCATGAAATAAATTTCTTTACCGATTCAATGATT
CAAGTGTAATATTCAAACTCCAAATATTTGAAATACAAGTTTTCTTGTCATGGTAATTTT
ATTATTCATAACTAGTGTATTATATATCTCCTTTGTTTGAATAAAATAAGAGAAAATTCA
AAACGTGGAGCTAATCTTTGTAAGATTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGATCACCCAGCTACCTGCTCAGCTCTTCGGCAGTGCGCATGACGTCCCTGAAAAGC
AACGCTAAGAACATCGTGACCAATTCTGTAGTACCAAATGGGCACAGCGTGAAACAGGAA
ATGGCACTGTGATTTTGGCCATTCAGCTCACTACTTGAAAAGAGCATACTCTTCTATCTC
TATTGCATAGAGCAGAACTGAACAATTTTCTTTCTTACTGTATCTCAACTAATTCATTAC
GTGATTTCACGACTGACTCAGAAAAGGCAAAATAAACAGAGCTAATATTTTTCTCTGAAC
CAAATTTTACAAGACATTTAAAAAAATGTATTACATTAAATGCTTCAAAAAGCAATTCTA
TGTGTATAAATCAATATTGTTTCAACATCCAAGTTGTTCCTAGAGACAACTCCAGTGTAT
TTATCTTAAATTTGTATTATCTTGGAGCATGAAATAAATTTCTTTACCGATTCAATGATT
CAAGTGTAATATTCAAACTCCAAATATTTGAAATACAAGTTTTCTTGTCATGGTAATTTT
ATTATTCATAACTAGTGTATTATATATCTCCTTTGTTTGAATAAAATAAGAGAAAATTCA
AAACGTGGAGCTAATCTTTGTAAGATTAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               368-467, - strand, RNAz p=0.685746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-467, - strand, RNAz p=0.685746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-628, gnl|bosTau2|chr9 (45487264-45487904)
               

               
               1-628, gnl|Hg17|chr6 (142438609-142437823)
               

               
               1-628, gnl|Mm7|chr10 (14472718-14473390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-628, gnl|bosTau2|chr9 (45487264-45487904)
               

               
               1-628, gnl|Hg17|chr6 (142438609-142437823)
               

               
               1-628, gnl|Mm7|chr10 (14472718-14473390)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-628, gnl\|bosTau2\|chr9 (45487264-45487904)
	1-628, gnl\|Hg17\|chr6 (142438609-142437823)
	1-628, gnl\|Mm7\|chr10 (14472718-14473390)