Non-Coding RNA Search

rspc033_i20.y1

Sequence:


               
               CCCCACCAAGCACACTGTTTTCTAATAAACATAGAGAAGAAAAATGTTTATCTTCCTAGA
ATACAAAATAACTTTCAGTGTTTCCTTGTTTCCTTTTTTTCCGAATTCATTTGATCTGTT
TTTCAATTGACATTCCTTAAAATTTGAATGATATGAAAATGAAAGATGACTAAACAAATA
TAATAAGGAAAAAGAATTAGTCAGATCCTTGAGGGCAGAAACAGTATTTTATATATTTTC
ATATCACCCGTCGTCATAGGACCCAAACAAAACTAAAATTAGCATCTTGGGATAAATCTT
TTCAGTCTCCCTTTTTCTACGCCCAGGGCGTCGAGCGTGCTCGTTTTATCTTTAAAATCC
TTCAATATTTTGACTTTTTTTCTGCTTTATAAAGAAATAAATTGTATTATGCTGGGAATA
ATATAGTTATTATTATGTATTATGTATGTATTATTATTAAACATAATAATAATCGTGAAA
AAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACCAAGCACACTGTTTTCTAATAAACATAGAGAAGAAAAATGTTTATCTTCCTAGA
ATACAAAATAACTTTCAGTGTTTCCTTGTTTCCTTTTTTTCCGAATTCATTTGATCTGTT
TTTCAATTGACATTCCTTAAAATTTGAATGATATGAAAATGAAAGATGACTAAACAAATA
TAATAAGGAAAAAGAATTAGTCAGATCCTTGAGGGCAGAAACAGTATTTTATATATTTTC
ATATCACCCGTCGTCATAGGACCCAAACAAAACTAAAATTAGCATCTTGGGATAAATCTT
TTCAGTCTCCCTTTTTCTACGCCCAGGGCGTCGAGCGTGCTCGTTTTATCTTTAAAATCC
TTCAATATTTTGACTTTTTTTCTGCTTTATAAAGAAATAAATTGTATTATGCTGGGAATA
ATATAGTTATTATTATGTATTATGTATGTATTATTATTAAACATAATAATAATCGTGAAA
AAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-393, - strand, RNAz p=0.993878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-393, - strand, RNAz p=0.993878

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-393, gnl|bosTau2|chr6 (53183926-53183519)
               

               
               5-393, gnl|Hg17|chr4 (82302272-82301867)
               

               
               5-393, gnl|Mm7|chr5 (98061615-98061211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-393, gnl|bosTau2|chr6 (53183926-53183519)
               

               
               5-393, gnl|Hg17|chr4 (82302272-82301867)
               

               
               5-393, gnl|Mm7|chr5 (98061615-98061211)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	5-393, gnl\|bosTau2\|chr6 (53183926-53183519)
	5-393, gnl\|Hg17\|chr4 (82302272-82301867)
	5-393, gnl\|Mm7\|chr5 (98061615-98061211)