Non-Coding RNA Search

rspc034_h11.y1

Sequence:


               
               CTACACCAACCAGGTTTGAAATACATTTTGCTTCTGCTAGGTGGGATCCAGGAACCATAA
GGTGACATGGAATTGTTCTAAGTAAAAGAGACATTCAACTAAAGAATAACTAACATAGCA
TTTGGCAATGATACAACTGTAAATTATCCTATGGTGTACCAGAAATCATTTCCAATGAGT
TAAAGGAGGGATAGCTTAATTTTTCATTTACTAATGAACTGGTTCTATCACAACATTCCT
TTTCCCAACTCAGTTGTTCTGTAGGCTATGGAAAATCTCACTTCTGAAGAATGTCATGTT
CGAGTTTTCCCACTTGGAATTTTAAAAGTCATTTATTTTAGTGAATGTGAGACAAGACAG
AAATAGCTCAAGGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACACCAACCAGGTTTGAAATACATTTTGCTTCTGCTAGGTGGGATCCAGGAACCATAA
GGTGACATGGAATTGTTCTAAGTAAAAGAGACATTCAACTAAAGAATAACTAACATAGCA
TTTGGCAATGATACAACTGTAAATTATCCTATGGTGTACCAGAAATCATTTCCAATGAGT
TAAAGGAGGGATAGCTTAATTTTTCATTTACTAATGAACTGGTTCTATCACAACATTCCT
TTTCCCAACTCAGTTGTTCTGTAGGCTATGGAAAATCTCACTTCTGAAGAATGTCATGTT
CGAGTTTTCCCACTTGGAATTTTAAAAGTCATTTATTTTAGTGAATGTGAGACAAGACAG
AAATAGCTCAAGGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               221-330, + strand, RNAz p=0.955628

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-330, + strand, RNAz p=0.955628

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-380, gnl|bosTau2|chr9 (13624726-13624345)
               

               
               1-380, gnl|canFam2|chr1 (67268565-67268880)
               

               
               1-380, gnl|echTel1|scaffold_308036 (165638-165937)
               

               
               1-380, gnl|hg17|chr6 (125619383-125619684)
               

               
               1-380, gnl|Hg17|chr6 (125619817-125619436)
               

               
               1-380, gnl|loxAfr1|scaffold_37194 (35986-36290)
               

               
               1-380, gnl|mm7|chr10 (31119545-31119143)
               

               
               1-380, gnl|Mm7|chr10 (31119015-31119489)
               

               
               1-380, gnl|monDom2|scaffold_0 (88966175-88965893)
               

               
               1-380, gnl|oryCun1|scaffold_177142 (114187-114464)
               

               
               1-380, gnl|panTro1|chr5 (128149578-128149874)
               

               
               1-380, gnl|rheMac2|chr4 (138685517-138685216)
               

               
               1-380, gnl|rn3|chr1 (26949962-26950349)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr9 (13624726-13624345)
               

               
               1-380, gnl|canFam2|chr1 (67268565-67268880)
               

               
               1-380, gnl|echTel1|scaffold_308036 (165638-165937)
               

               
               1-380, gnl|hg17|chr6 (125619383-125619684)
               

               
               1-380, gnl|Hg17|chr6 (125619817-125619436)
               

               
               1-380, gnl|loxAfr1|scaffold_37194 (35986-36290)
               

               
               1-380, gnl|mm7|chr10 (31119545-31119143)
               

               
               1-380, gnl|Mm7|chr10 (31119015-31119489)
               

               
               1-380, gnl|monDom2|scaffold_0 (88966175-88965893)
               

               
               1-380, gnl|oryCun1|scaffold_177142 (114187-114464)
               

               
               1-380, gnl|panTro1|chr5 (128149578-128149874)
               

               
               1-380, gnl|rheMac2|chr4 (138685517-138685216)
               

               
               1-380, gnl|rn3|chr1 (26949962-26950349)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-380, gnl\|bosTau2\|chr9 (13624726-13624345)
	1-380, gnl\|canFam2\|chr1 (67268565-67268880)
	1-380, gnl\|echTel1\|scaffold_308036 (165638-165937)
	1-380, gnl\|hg17\|chr6 (125619383-125619684)
	1-380, gnl\|Hg17\|chr6 (125619817-125619436)
	1-380, gnl\|loxAfr1\|scaffold_37194 (35986-36290)
	1-380, gnl\|mm7\|chr10 (31119545-31119143)
	1-380, gnl\|Mm7\|chr10 (31119015-31119489)
	1-380, gnl\|monDom2\|scaffold_0 (88966175-88965893)
	1-380, gnl\|oryCun1\|scaffold_177142 (114187-114464)
	1-380, gnl\|panTro1\|chr5 (128149578-128149874)
	1-380, gnl\|rheMac2\|chr4 (138685517-138685216)
	1-380, gnl\|rn3\|chr1 (26949962-26950349)