Non-Coding RNA Search

rspc035_f18.y1

Sequence:


               
               AGATTTCGAACCACATAAACATGTCTCTCTGTTTTACATTTCATTTTTTAACTGTTAACT
TAGGTGTTGCAGTTCTGTTGGATGGCATTTCTGCAGGGCTGTATTTAGCATGCTGTGAGT
ACTTTTGGTTGAAATAGGCTCTTCGTCTAAATTCTCAGAAATGTTTCTGATGTGTTGACC
ATGAAAAGCTTGTTCCACATGACAGAAGTGACATCATAATCTTACCCTCTTCTTGACACG
GACTGGTCCTTTACGCTGGCACCGATAAATAACAGATTTGGATTATCTCCTGGTGCTTAT
TTTAGATGAAGTCAAATCAACCCAATTAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTCGAACCACATAAACATGTCTCTCTGTTTTACATTTCATTTTTTAACTGTTAACT
TAGGTGTTGCAGTTCTGTTGGATGGCATTTCTGCAGGGCTGTATTTAGCATGCTGTGAGT
ACTTTTGGTTGAAATAGGCTCTTCGTCTAAATTCTCAGAAATGTTTCTGATGTGTTGACC
ATGAAAAGCTTGTTCCACATGACAGAAGTGACATCATAATCTTACCCTCTTCTTGACACG
GACTGGTCCTTTACGCTGGCACCGATAAATAACAGATTTGGATTATCTCCTGGTGCTTAT
TTTAGATGAAGTCAAATCAACCCAATTAGTGTC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-333, gnl|bosTau2|chr27 (7103142-7103476)
               

               
               1-333, gnl|canFam2|chr16 (50401640-50400809)
               

               
               1-333, gnl|dasNov1|scaffold_10666 (4315-3481)
               

               
               1-333, gnl|echTel1|scaffold_297346 (11456-10622)
               

               
               1-333, gnl|galGal2|chr4 (40665391-40664546)
               

               
               1-333, gnl|hg17|chr4 (184098234-184099067)
               

               
               1-333, gnl|Hg17|chr4 (184098644-184098971)
               

               
               1-333, gnl|loxAfr1|scaffold_5763 (79695-80521)
               

               
               1-333, gnl|mm7|chr8 (47000498-46999673)
               

               
               1-333, gnl|Mm7|chr8 (47000094-46999767)
               

               
               1-333, gnl|monDom2|scaffold_9 (64512786-64513640)
               

               
               1-333, gnl|oryCun1|scaffold_197797 (132619-131788)
               

               
               1-333, gnl|panTro1|chr3_random (29411878-29411050)
               

               
               1-333, gnl|rheMac2|chr5 (174916495-174917324)
               

               
               1-333, gnl|rn3|chr16 (47148480-47149299)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-333, gnl|bosTau2|chr27 (7103142-7103476)
               

               
               1-333, gnl|canFam2|chr16 (50401640-50400809)
               

               
               1-333, gnl|dasNov1|scaffold_10666 (4315-3481)
               

               
               1-333, gnl|echTel1|scaffold_297346 (11456-10622)
               

               
               1-333, gnl|galGal2|chr4 (40665391-40664546)
               

               
               1-333, gnl|hg17|chr4 (184098234-184099067)
               

               
               1-333, gnl|Hg17|chr4 (184098644-184098971)
               

               
               1-333, gnl|loxAfr1|scaffold_5763 (79695-80521)
               

               
               1-333, gnl|mm7|chr8 (47000498-46999673)
               

               
               1-333, gnl|Mm7|chr8 (47000094-46999767)
               

               
               1-333, gnl|monDom2|scaffold_9 (64512786-64513640)
               

               
               1-333, gnl|oryCun1|scaffold_197797 (132619-131788)
               

               
               1-333, gnl|panTro1|chr3_random (29411878-29411050)
               

               
               1-333, gnl|rheMac2|chr5 (174916495-174917324)
               

               
               1-333, gnl|rn3|chr16 (47148480-47149299)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.113366)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-333, gnl\|bosTau2\|chr27 (7103142-7103476)
	1-333, gnl\|canFam2\|chr16 (50401640-50400809)
	1-333, gnl\|dasNov1\|scaffold_10666 (4315-3481)
	1-333, gnl\|echTel1\|scaffold_297346 (11456-10622)
	1-333, gnl\|galGal2\|chr4 (40665391-40664546)
	1-333, gnl\|hg17\|chr4 (184098234-184099067)
	1-333, gnl\|Hg17\|chr4 (184098644-184098971)
	1-333, gnl\|loxAfr1\|scaffold_5763 (79695-80521)
	1-333, gnl\|mm7\|chr8 (47000498-46999673)
	1-333, gnl\|Mm7\|chr8 (47000094-46999767)
	1-333, gnl\|monDom2\|scaffold_9 (64512786-64513640)
	1-333, gnl\|oryCun1\|scaffold_197797 (132619-131788)
	1-333, gnl\|panTro1\|chr3_random (29411878-29411050)
	1-333, gnl\|rheMac2\|chr5 (174916495-174917324)
	1-333, gnl\|rn3\|chr16 (47148480-47149299)