Non-Coding RNA Search

rspl01_m7.y1

Sequence:


               
               CTCATTCACCTCCACGCGGTTCATCCAGTCTGCTGGGACAGTGACTGGATGTAGCCTACC
CAAGCTCCCGGCACTGCTGCTGCCTGGGGGAACAATGTGGTGGTGGGACAGCAGCTGGCT
CACTGAGGGAAGCACAGTGCTGGTCCCATGGGCCAAGGGCTGCATCTCATGAAGGTTAGA
GAAGGACAGTGCATGCTGTGCATGGACTGGGGCAGGGGGCGCAGCAGGGGCCAACATAGG
GTTGGGTGAGGCCTGTAAGATTCCAGGAGATGTGATCATTGGAGAGGATGTGGTATCAGA
AACATAAGTGTGAGGAGATTCTAGGGAATCGACAGGGGAGAGAGTCACTGAGCTCTCAGA
CAGCTGGCCCTTGTCACTCAGAGACTTCTTCCTCCTATTCCCCTTGGCATCCTTGCCCTC
CTTGGCCAGGTTAGGGAGACTAGTGGGCACAGCATTCTTGGCATTGGGCCGTCTAGACTT
CTTGCCCATCGGGGTGTGCTTCAGACTGAGAAAAGATCTGTTGGGCCCACAGATGACAGG
TGAGAGAGCAGAAGTCAGCACAGTGCCTGGAGGGCTCGGTGTCACATTGTACTCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTCACCTCCACGCGGTTCATCCAGTCTGCTGGGACAGTGACTGGATGTAGCCTACC
CAAGCTCCCGGCACTGCTGCTGCCTGGGGGAACAATGTGGTGGTGGGACAGCAGCTGGCT
CACTGAGGGAAGCACAGTGCTGGTCCCATGGGCCAAGGGCTGCATCTCATGAAGGTTAGA
GAAGGACAGTGCATGCTGTGCATGGACTGGGGCAGGGGGCGCAGCAGGGGCCAACATAGG
GTTGGGTGAGGCCTGTAAGATTCCAGGAGATGTGATCATTGGAGAGGATGTGGTATCAGA
AACATAAGTGTGAGGAGATTCTAGGGAATCGACAGGGGAGAGAGTCACTGAGCTCTCAGA
CAGCTGGCCCTTGTCACTCAGAGACTTCTTCCTCCTATTCCCCTTGGCATCCTTGCCCTC
CTTGGCCAGGTTAGGGAGACTAGTGGGCACAGCATTCTTGGCATTGGGCCGTCTAGACTT
CTTGCCCATCGGGGTGTGCTTCAGACTGAGAAAAGATCTGTTGGGCCCACAGATGACAGG
TGAGAGAGCAGAAGTCAGCACAGTGCCTGGAGGGCTCGGTGTCACATTGTACTCGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-239, - strand, RNAz p=0.827827
               

               
               280-439, + strand, RNAz p=0.617723

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.827827
               

               
               280-439, + strand, RNAz p=0.617723

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-597, gnl|bosTau2|chr3 (18490666-18490070)
               

               
               1-597, gnl|Hg17|chr1 (120170604-120171200)
               

               
               1-597, gnl|Mm7|chr3 (98018032-98017436)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-597, gnl|bosTau2|chr3 (18490666-18490070)
               

               
               1-597, gnl|Hg17|chr1 (120170604-120171200)
               

               
               1-597, gnl|Mm7|chr3 (98018032-98017436)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	80-239, - strand, RNAz p=0.827827
	280-439, + strand, RNAz p=0.617723

	1-597, gnl\|bosTau2\|chr3 (18490666-18490070)
	1-597, gnl\|Hg17\|chr1 (120170604-120171200)
	1-597, gnl\|Mm7\|chr3 (98018032-98017436)