Non-Coding RNA Search

rspl02_f2.y1

Sequence:


               
               AAAAAAAGAAAAGAAAAGAAAGTCACCATAGCTGCATTGTGGTGAATGAACTGCAGAAAG
TTTAAAATCTCTTGTAGTGGTCTGCCTGGGAGGTGATGGTAGCTTGGACCTCTCGCCTTA
TCAGCCATGGGAACTGAGTTTTAAAAGAGCTTCCTAAGGTTTTCCCTGTGTTTTTCTGCA
TCATATGCCAGACTTAGAGACTGGTGCATTTTTAGCACGGTCCCTAATTCCCTCCATTTC
ACAAATTTATAGCATTTTAGGATGGGCTCAGCAGTACTAGTGGCTGAAAAGTCTTTTTTA
AATTTCCCTTCATGGAATTCAGCTTTCAAGATATAAGACTACCAAACCAAGCAGTTCCAA
ATATAATTTCCCCACTTGTCAATGGGCAGGATGCCCAGGTTCAGGCCTTCCTGCCATTGA
TTGACTATAATGCAACTTTGAGAATATGGTTTTCCTCAACATTTACAAAACATTACTGCT
GTACAAATAAGGGAATGAGTTTGCTTGAGATGTTTTAAGAGTCACCTTTGTGTGAAGTTT
CCTTGTTAATGAATAAGAATCACAAATGTATTTAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGAAAAGAAAAGAAAGTCACCATAGCTGCATTGTGGTGAATGAACTGCAGAAAG
TTTAAAATCTCTTGTAGTGGTCTGCCTGGGAGGTGATGGTAGCTTGGACCTCTCGCCTTA
TCAGCCATGGGAACTGAGTTTTAAAAGAGCTTCCTAAGGTTTTCCCTGTGTTTTTCTGCA
TCATATGCCAGACTTAGAGACTGGTGCATTTTTAGCACGGTCCCTAATTCCCTCCATTTC
ACAAATTTATAGCATTTTAGGATGGGCTCAGCAGTACTAGTGGCTGAAAAGTCTTTTTTA
AATTTCCCTTCATGGAATTCAGCTTTCAAGATATAAGACTACCAAACCAAGCAGTTCCAA
ATATAATTTCCCCACTTGTCAATGGGCAGGATGCCCAGGTTCAGGCCTTCCTGCCATTGA
TTGACTATAATGCAACTTTGAGAATATGGTTTTCCTCAACATTTACAAAACATTACTGCT
GTACAAATAAGGGAATGAGTTTGCTTGAGATGTTTTAAGAGTCACCTTTGTGTGAAGTTT
CCTTGTTAATGAATAAGAATCACAAATGTATTTAATTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               420-539, - strand, RNAz p=0.678677

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-539, - strand, RNAz p=0.678677

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               19-238, gnl|bosTau2|chr11 (3107816-3108041)
               

               
               19-238, gnl|canFam2|chr10 (47889064-47888640)
               

               
               19-238, gnl|echTel1|scaffold_262115 (11110-10747)
               

               
               19-238, gnl|hg17|chr2 (97905697-97906123)
               

               
               19-238, gnl|Hg17|chr2 (97906194-97905919)
               

               
               19-238, gnl|loxAfr1|scaffold_7100 (30262-30632)
               

               
               19-238, gnl|mm7|chr1 (37074090-37074472)
               

               
               19-238, gnl|oryCun1|scaffold_207799 (65661-65231)
               

               
               19-238, gnl|panTro1|chr12 (100604598-100605025)
               

               
               19-238, gnl|rheMac2|chr13 (97661095-97661519)
               

               
               19-238, gnl|rn3|chr9 (35761454-35761824)
               


               
               341-575, gnl|bosTau2|chr11 (3108274-3108506)
               

               
               341-575, gnl|Hg17|chr2 (97905813-97905589)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-238, gnl|bosTau2|chr11 (3107816-3108041)
               

               
               19-238, gnl|canFam2|chr10 (47889064-47888640)
               

               
               19-238, gnl|echTel1|scaffold_262115 (11110-10747)
               

               
               19-238, gnl|hg17|chr2 (97905697-97906123)
               

               
               19-238, gnl|Hg17|chr2 (97906194-97905919)
               

               
               19-238, gnl|loxAfr1|scaffold_7100 (30262-30632)
               

               
               19-238, gnl|mm7|chr1 (37074090-37074472)
               

               
               19-238, gnl|oryCun1|scaffold_207799 (65661-65231)
               

               
               19-238, gnl|panTro1|chr12 (100604598-100605025)
               

               
               19-238, gnl|rheMac2|chr13 (97661095-97661519)
               

               
               19-238, gnl|rn3|chr9 (35761454-35761824)
               


               
               341-575, gnl|bosTau2|chr11 (3108274-3108506)
               

               
               341-575, gnl|Hg17|chr2 (97905813-97905589)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	19-238, gnl\|bosTau2\|chr11 (3107816-3108041)
	19-238, gnl\|canFam2\|chr10 (47889064-47888640)
	19-238, gnl\|echTel1\|scaffold_262115 (11110-10747)
	19-238, gnl\|hg17\|chr2 (97905697-97906123)
	19-238, gnl\|Hg17\|chr2 (97906194-97905919)
	19-238, gnl\|loxAfr1\|scaffold_7100 (30262-30632)
	19-238, gnl\|mm7\|chr1 (37074090-37074472)
	19-238, gnl\|oryCun1\|scaffold_207799 (65661-65231)
	19-238, gnl\|panTro1\|chr12 (100604598-100605025)
	19-238, gnl\|rheMac2\|chr13 (97661095-97661519)
	19-238, gnl\|rn3\|chr9 (35761454-35761824)

	341-575, gnl\|bosTau2\|chr11 (3108274-3108506)
	341-575, gnl\|Hg17\|chr2 (97905813-97905589)