Non-Coding RNA Search

rspl02_h14.y1

Sequence:


               
               AGACAACTAATGTTAAATGAAGAACAGTTGGAAGATATGAGACAGGAACTTGTACGACAA
TATGAAGAACATCAACAGGCAACAGAATTATTAAGGCAGGCACACATGCGGCAGATGGAG
AGACAGCGAGAAGACCAGGAACAGCTACAAGAAGAGATTAAGCGGCTAAATAAACAACTA
GCTCAGAGATCCTCAATAGATAATGAAAACCTGGTTTCAGAGAGAGAGAGGGTGCTTTTA
GAGGAGCTGGAAGCACTAAAGCAGCTGTCTTTAGCTGGAAGAGAGAAGCTGTGTTGTGAG
CTGCGCAACAGCAGTACGCAAACACAGAATGGAAATGAAAACCAAGAAGTTGAGGAACAG
ACCTTTAAAGAAAAGGAATTGGACAGAAAACCTGAAGAGGTGCCTCCTGAAATTCTGTCC
AGTGAAAGGTATGCACTCCAGAAGGCTAATAATAGACTTTTGAAAATCCTCTTAGAAGTT
GTAAAGACAACAGCAGCTGTTGAAGAAACAATTGGTCGCCATGTCCTTGGTATTCTAGAT
AGATCTAGTAAAGGCCAGTCATCTGCCTGCCTAATTTGGATGTCAGAAGCAGAGACACCA
ATAAAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAACTAATGTTAAATGAAGAACAGTTGGAAGATATGAGACAGGAACTTGTACGACAA
TATGAAGAACATCAACAGGCAACAGAATTATTAAGGCAGGCACACATGCGGCAGATGGAG
AGACAGCGAGAAGACCAGGAACAGCTACAAGAAGAGATTAAGCGGCTAAATAAACAACTA
GCTCAGAGATCCTCAATAGATAATGAAAACCTGGTTTCAGAGAGAGAGAGGGTGCTTTTA
GAGGAGCTGGAAGCACTAAAGCAGCTGTCTTTAGCTGGAAGAGAGAAGCTGTGTTGTGAG
CTGCGCAACAGCAGTACGCAAACACAGAATGGAAATGAAAACCAAGAAGTTGAGGAACAG
ACCTTTAAAGAAAAGGAATTGGACAGAAAACCTGAAGAGGTGCCTCCTGAAATTCTGTCC
AGTGAAAGGTATGCACTCCAGAAGGCTAATAATAGACTTTTGAAAATCCTCTTAGAAGTT
GTAAAGACAACAGCAGCTGTTGAAGAAACAATTGGTCGCCATGTCCTTGGTATTCTAGAT
AGATCTAGTAAAGGCCAGTCATCTGCCTGCCTAATTTGGATGTCAGAAGCAGAGACACCA
ATAAAGTCA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-186, gnl|bosTau2|chr4 (1591172-1590987)
               

               
               1-186, gnl|canFam2|chr14 (20614543-20614785)
               

               
               1-186, gnl|echTel1|scaffold_315915 (49060-49302)
               

               
               1-186, gnl|galGal2|chr2 (21755984-21756228)
               

               
               1-186, gnl|hg17|chr7 (91314626-91314870)
               

               
               1-186, gnl|Hg17|chr7 (91314678-91314863)
               

               
               1-186, gnl|loxAfr1|scaffold_858 (17735-17493)
               

               
               1-186, gnl|mm7|chr5 (4009555-4009792)
               

               
               1-186, gnl|Mm7|chr5 (4009606-4009788)
               

               
               1-186, gnl|monDom2|scaffold_7 (60025909-60026149)
               

               
               1-186, gnl|oryCun1|scaffold_204582 (11411-11169)
               

               
               1-186, gnl|panTro1|chr6 (92869160-92869404)
               

               
               1-186, gnl|rheMac2|chr3 (125207121-125206877)
               

               
               1-186, gnl|rn3|chr4 (26856023-26855785)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr4 (1591172-1590987)
               

               
               1-186, gnl|canFam2|chr14 (20614543-20614785)
               

               
               1-186, gnl|echTel1|scaffold_315915 (49060-49302)
               

               
               1-186, gnl|galGal2|chr2 (21755984-21756228)
               

               
               1-186, gnl|hg17|chr7 (91314626-91314870)
               

               
               1-186, gnl|Hg17|chr7 (91314678-91314863)
               

               
               1-186, gnl|loxAfr1|scaffold_858 (17735-17493)
               

               
               1-186, gnl|mm7|chr5 (4009555-4009792)
               

               
               1-186, gnl|Mm7|chr5 (4009606-4009788)
               

               
               1-186, gnl|monDom2|scaffold_7 (60025909-60026149)
               

               
               1-186, gnl|oryCun1|scaffold_204582 (11411-11169)
               

               
               1-186, gnl|panTro1|chr6 (92869160-92869404)
               

               
               1-186, gnl|rheMac2|chr3 (125207121-125206877)
               

               
               1-186, gnl|rn3|chr4 (26856023-26855785)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-186, gnl\|bosTau2\|chr4 (1591172-1590987)
	1-186, gnl\|canFam2\|chr14 (20614543-20614785)
	1-186, gnl\|echTel1\|scaffold_315915 (49060-49302)
	1-186, gnl\|galGal2\|chr2 (21755984-21756228)
	1-186, gnl\|hg17\|chr7 (91314626-91314870)
	1-186, gnl\|Hg17\|chr7 (91314678-91314863)
	1-186, gnl\|loxAfr1\|scaffold_858 (17735-17493)
	1-186, gnl\|mm7\|chr5 (4009555-4009792)
	1-186, gnl\|Mm7\|chr5 (4009606-4009788)
	1-186, gnl\|monDom2\|scaffold_7 (60025909-60026149)
	1-186, gnl\|oryCun1\|scaffold_204582 (11411-11169)
	1-186, gnl\|panTro1\|chr6 (92869160-92869404)
	1-186, gnl\|rheMac2\|chr3 (125207121-125206877)
	1-186, gnl\|rn3\|chr4 (26856023-26855785)