Non-Coding RNA Search

rspl02_l23.y1

Sequence:


               
               TGAAAATAAACCAAGAGAGGGGCTTTGCATAAACCAATAGAAGTAGTATATTCTGGATTG
AGAAGTGCGGTTTGGGGATAGGGTGAATGTAATTTAGGAGAGGTGACCAGAAAATCAGAT
AGGTGACTAGCCAAAAAGTGTTAATTGAAGAAAAAGAAAAAGAAAAATATCTTAAGTGTT
ATGATTCATAAGTAAGATGCCTGTAAGGAAGAAAAATGCTCTTAACTACATCTGGTCATG
GTCCTTTTTTTTTTTTTGCTTTTAAAGCTTGTGTGGGAGAAACAGGAATTTCTTTTTTTT
TCCCCTTAGGTGAAGATATCTGTAAAAAAGAAAGCAGATGTTTCTTTTCAAGTGCATGTA
TACACCTGTCATAAGACAAAATGAGTAGTTACTATTGAGAACAGGCTCTGGTTATTTTTT
ATGTTGCTTGTTAAATTAAAATTTTTTTCCTGGCAAGTGTAGGTTTATAATTAAGTCGTT
TATCATAAGTGTTCTTTTGGCTGCATCTTAAATTTGATGACATGCAGAAGTGATATGTGG
GTGGTTACTTAGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAATAAACCAAGAGAGGGGCTTTGCATAAACCAATAGAAGTAGTATATTCTGGATTG
AGAAGTGCGGTTTGGGGATAGGGTGAATGTAATTTAGGAGAGGTGACCAGAAAATCAGAT
AGGTGACTAGCCAAAAAGTGTTAATTGAAGAAAAAGAAAAAGAAAAATATCTTAAGTGTT
ATGATTCATAAGTAAGATGCCTGTAAGGAAGAAAAATGCTCTTAACTACATCTGGTCATG
GTCCTTTTTTTTTTTTTGCTTTTAAAGCTTGTGTGGGAGAAACAGGAATTTCTTTTTTTT
TCCCCTTAGGTGAAGATATCTGTAAAAAAGAAAGCAGATGTTTCTTTTCAAGTGCATGTA
TACACCTGTCATAAGACAAAATGAGTAGTTACTATTGAGAACAGGCTCTGGTTATTTTTT
ATGTTGCTTGTTAAATTAAAATTTTTTTCCTGGCAAGTGTAGGTTTATAATTAAGTCGTT
TATCATAAGTGTTCTTTTGGCTGCATCTTAAATTTGATGACATGCAGAAGTGATATGTGG
GTGGTTACTTAGAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-256, - strand, RNAz p=0.509306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-256, - strand, RNAz p=0.509306

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-556, gnl|bosTau2|chr10 (53998730-53999290)
               

               
               3-556, gnl|Hg17|chr14 (67631119-67631660)
               

               
               3-556, gnl|Mm7|chr12 (77421889-77422426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-556, gnl|bosTau2|chr10 (53998730-53999290)
               

               
               3-556, gnl|Hg17|chr14 (67631119-67631660)
               

               
               3-556, gnl|Mm7|chr12 (77421889-77422426)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	3-556, gnl\|bosTau2\|chr10 (53998730-53999290)
	3-556, gnl\|Hg17\|chr14 (67631119-67631660)
	3-556, gnl\|Mm7\|chr12 (77421889-77422426)