Non-Coding RNA Search

rspl03_c10.y1

Sequence:


               
               CATGGCTCGTGGTCCCAAGAAACATCTGAAGCGCGTAGCAGCTCCAAAGCATTGGATGCT
GGATAAACTGACCGGTGTGTTTGCTCCTCGTCCATCTACTGGTCCCCACAAGTTGAGGGA
ATGTCTCCCCCTCATTATTTTCCTAAGGAACAGACTTAAGTATGCCCTAACAGGAGATGA
AGTAAAGAAGATATGCATGCAGCGTTTCATTAAGATAGACGGCAAGGTCCGCACTGATAT
AACCTACCCCGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCG
TCTGATCTATGACACCAAGGGCCGTTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAA
GTACAAGTTGTGCAAAGTGAGAAAGATATTTGTGGGCACAAAAGGAATCCCTCACCTGGT
CACCCACGATGCCCGTACCATCCGCTACCCTGATCCCCTCATCAAGGTGAATGACACCAT
TCAAATTGATTTGGAGACTGGCAAGATCACTGATTTCATCAAATTTGATACTGGTAACCT
ATGCATGGTGACTGGAGGTGCTAACCTGGGAAGAATTGGTGTGATCACCAACAGGGAGAG
ACATCCTGGTTCTTTCGATGTAGTCCATGTGAAAGATGCCAATGGCAACAGCTTCGCCAC
CCGGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGCTCGTGGTCCCAAGAAACATCTGAAGCGCGTAGCAGCTCCAAAGCATTGGATGCT
GGATAAACTGACCGGTGTGTTTGCTCCTCGTCCATCTACTGGTCCCCACAAGTTGAGGGA
ATGTCTCCCCCTCATTATTTTCCTAAGGAACAGACTTAAGTATGCCCTAACAGGAGATGA
AGTAAAGAAGATATGCATGCAGCGTTTCATTAAGATAGACGGCAAGGTCCGCACTGATAT
AACCTACCCCGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCG
TCTGATCTATGACACCAAGGGCCGTTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAA
GTACAAGTTGTGCAAAGTGAGAAAGATATTTGTGGGCACAAAAGGAATCCCTCACCTGGT
CACCCACGATGCCCGTACCATCCGCTACCCTGATCCCCTCATCAAGGTGAATGACACCAT
TCAAATTGATTTGGAGACTGGCAAGATCACTGATTTCATCAAATTTGATACTGGTAACCT
ATGCATGGTGACTGGAGGTGCTAACCTGGGAAGAATTGGTGTGATCACCAACAGGGAGAG
ACATCCTGGTTCTTTCGATGTAGTCCATGTGAAAGATGCCAATGGCAACAGCTTCGCCAC
CCGGCTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37779112|gb|AAP20216.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37779112|gb|AAP20216.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-559, - strand, RNAz p=0.834744

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-559, - strand, RNAz p=0.834744

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-622, gnl|bosTau2|chr11 (84762063-84761446)
               

               
               1-622, gnl|Hg17|chr20 (4558866-4558245)
               

               
               1-622, gnl|Mm7|chr2 (83197666-83197045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-622, gnl|bosTau2|chr11 (84762063-84761446)
               

               
               1-622, gnl|Hg17|chr20 (4558866-4558245)
               

               
               1-622, gnl|Mm7|chr2 (83197666-83197045)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-622, gnl\|bosTau2\|chr11 (84762063-84761446)
	1-622, gnl\|Hg17\|chr20 (4558866-4558245)
	1-622, gnl\|Mm7\|chr2 (83197666-83197045)