Non-Coding RNA Search

rspl04_c13.y1

Sequence:


               
               GTGGGTGTTTGTGTTGAGACCCCACACTGGATTCTGAACTTTTTAAAAGCTCAGAGCTGT
GTCATTTATTTCTGGAGCCCCCATGCCTGGCTTACTGTTGGGAAGAGTAGTTGCTTAATA
GATATCTATTGATTGGACAGAATTCATGGCAAAATCAATATGTCTATTCTTCTTGAATAG
TAATTTAAAAAAATCACAAGCACTAACCTACCCCATGATTTTGGATAAGTCCATTTTACC
ACCTTAGCTTTAAGTGGTAGATTTAAAGTGCTGTAAAGTGAAGGGATGCTTCCGAGAGCC
TTACTTGTTCTAAGATACCGAGATTCGACTTAACTTGTGTGACTGTCTGTCATGATAACA
TGGGTCAGCTCTTGGCTCACAAATGGAATGAAGGGATGGAAGGACCGTGGAAAGAAGGTG
CACGATTCTAATATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGTGTTTGTGTTGAGACCCCACACTGGATTCTGAACTTTTTAAAAGCTCAGAGCTGT
GTCATTTATTTCTGGAGCCCCCATGCCTGGCTTACTGTTGGGAAGAGTAGTTGCTTAATA
GATATCTATTGATTGGACAGAATTCATGGCAAAATCAATATGTCTATTCTTCTTGAATAG
TAATTTAAAAAAATCACAAGCACTAACCTACCCCATGATTTTGGATAAGTCCATTTTACC
ACCTTAGCTTTAAGTGGTAGATTTAAAGTGCTGTAAAGTGAAGGGATGCTTCCGAGAGCC
TTACTTGTTCTAAGATACCGAGATTCGACTTAACTTGTGTGACTGTCTGTCATGATAACA
TGGGTCAGCTCTTGGCTCACAAATGGAATGAAGGGATGGAAGGACCGTGGAAAGAAGGTG
CACGATTCTAATATAAC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-245, gnl|bosTau2|chr21 (11802968-11803214)
               

               
               1-245, gnl|canFam2|chr3 (55873743-55874016)
               

               
               1-245, gnl|dasNov1|scaffold_14852 (64975-65246)
               

               
               1-245, gnl|hg17|chr15 (88358077-88358360)
               

               
               1-245, gnl|Hg17|chr15 (88358132-88358359)
               

               
               1-245, gnl|mm7|chr7 (75905535-75905808)
               

               
               1-245, gnl|Mm7|chr7 (75905593-75905826)
               

               
               1-245, gnl|oryCun1|scaffold_171030 (23295-23068)
               

               
               1-245, gnl|panTro1|chr16 (89285843-89286124)
               

               
               1-245, gnl|rheMac2|chr7 (69661226-69661495)
               

               
               1-245, gnl|rn3|chr1 (135894880-135895125)
               


               
               270-429, gnl|bosTau2|chr21 (11803571-11803730)
               

               
               270-429, gnl|Hg17|chr15 (88358396-88358553)
               

               
               270-429, gnl|Mm7|chr7 (75906095-75906248)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr21 (11802968-11803214)
               

               
               1-245, gnl|canFam2|chr3 (55873743-55874016)
               

               
               1-245, gnl|dasNov1|scaffold_14852 (64975-65246)
               

               
               1-245, gnl|hg17|chr15 (88358077-88358360)
               

               
               1-245, gnl|Hg17|chr15 (88358132-88358359)
               

               
               1-245, gnl|mm7|chr7 (75905535-75905808)
               

               
               1-245, gnl|Mm7|chr7 (75905593-75905826)
               

               
               1-245, gnl|oryCun1|scaffold_171030 (23295-23068)
               

               
               1-245, gnl|panTro1|chr16 (89285843-89286124)
               

               
               1-245, gnl|rheMac2|chr7 (69661226-69661495)
               

               
               1-245, gnl|rn3|chr1 (135894880-135895125)
               


               
               270-429, gnl|bosTau2|chr21 (11803571-11803730)
               

               
               270-429, gnl|Hg17|chr15 (88358396-88358553)
               

               
               270-429, gnl|Mm7|chr7 (75906095-75906248)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-245, gnl\|bosTau2\|chr21 (11802968-11803214)
	1-245, gnl\|canFam2\|chr3 (55873743-55874016)
	1-245, gnl\|dasNov1\|scaffold_14852 (64975-65246)
	1-245, gnl\|hg17\|chr15 (88358077-88358360)
	1-245, gnl\|Hg17\|chr15 (88358132-88358359)
	1-245, gnl\|mm7\|chr7 (75905535-75905808)
	1-245, gnl\|Mm7\|chr7 (75905593-75905826)
	1-245, gnl\|oryCun1\|scaffold_171030 (23295-23068)
	1-245, gnl\|panTro1\|chr16 (89285843-89286124)
	1-245, gnl\|rheMac2\|chr7 (69661226-69661495)
	1-245, gnl\|rn3\|chr1 (135894880-135895125)

	270-429, gnl\|bosTau2\|chr21 (11803571-11803730)
	270-429, gnl\|Hg17\|chr15 (88358396-88358553)
	270-429, gnl\|Mm7\|chr7 (75906095-75906248)