Non-Coding RNA Search

rspl04_f9.y1

Sequence:


               
               ATAGATATATTTGAGCATTATTATTTAAAGTTTAAATTTACTTTGAATAGTAACAGTCAA
TGCTCTCAGCCAGCTTTGTTTTGTGAGTTCAATATGTCTTAACTCAGTGTCTCCCCAACC
ACCTAACCCAATTTGCCTGCTATTCCCTACAATTGGCATGCTGATTTTTATTGTCCTGTT
TTTTTAGTTTCTCATCTTTTCAGTCTTCTCCTGGCCATAGAAAGAGCACTGTGTTCTTTT
GCCAATTCATGTTCTTATAACTTCAGTCAAACCAAATTCAAGATGACCTCCTCTGGTCAC
ATTTTCCTTATTAGCCTTCATTCCTAATCACAACACTTCTTGATAGCCTTCCTTTGAACT
CTTGTGTCTTTAACTTAGAGTCTATATTTTATTGATTTTCCTATAATTTGTAAATTATAA
AGATGGTTTATTATATGCATGAATCATCTTTCCTGTCCTGATTATAAGCTCCCTATAAGA
AGGGATCATATCTTCTAACCCTTTTGTATGCCTAGAATAGTGCTGTGCACAGGTAGGCAC
TGAATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGATATATTTGAGCATTATTATTTAAAGTTTAAATTTACTTTGAATAGTAACAGTCAA
TGCTCTCAGCCAGCTTTGTTTTGTGAGTTCAATATGTCTTAACTCAGTGTCTCCCCAACC
ACCTAACCCAATTTGCCTGCTATTCCCTACAATTGGCATGCTGATTTTTATTGTCCTGTT
TTTTTAGTTTCTCATCTTTTCAGTCTTCTCCTGGCCATAGAAAGAGCACTGTGTTCTTTT
GCCAATTCATGTTCTTATAACTTCAGTCAAACCAAATTCAAGATGACCTCCTCTGGTCAC
ATTTTCCTTATTAGCCTTCATTCCTAATCACAACACTTCTTGATAGCCTTCCTTTGAACT
CTTGTGTCTTTAACTTAGAGTCTATATTTTATTGATTTTCCTATAATTTGTAAATTATAA
AGATGGTTTATTATATGCATGAATCATCTTTCCTGTCCTGATTATAAGCTCCCTATAAGA
AGGGATCATATCTTCTAACCCTTTTGTATGCCTAGAATAGTGCTGTGCACAGGTAGGCAC
TGAATAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               192-307, - strand, RNAz p=0.577395

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-307, - strand, RNAz p=0.577395

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               7-549, gnl|bosTau2|chr9 (28149672-28149127)
               

               
               7-549, gnl|canFam2|chr1 (88109338-88108633)
               

               
               7-549, gnl|dasNov1|scaffold_94 (115178-114482)
               

               
               7-549, gnl|echTel1|scaffold_160358 (8163-8849)
               

               
               7-549, gnl|hg17|chr9 (72682041-72682722)
               

               
               7-549, gnl|Hg17|chr9 (72682057-72682579)
               

               
               7-549, gnl|loxAfr1|scaffold_41547 (6532-5877)
               

               
               7-549, gnl|mm7|chr19 (20484434-20483799)
               

               
               7-549, gnl|Mm7|chr19 (20484416-20483925)
               

               
               7-549, gnl|monDom2|scaffold_17 (16409175-16408474)
               

               
               7-549, gnl|oryCun1|scaffold_208448 (5420-6056)
               

               
               7-549, gnl|panTro1|chr11 (56511556-56512238)
               

               
               7-549, gnl|rheMac2|chr15 (81592985-81593666)
               

               
               7-549, gnl|rn3|chr1 (224075021-224074382)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-549, gnl|bosTau2|chr9 (28149672-28149127)
               

               
               7-549, gnl|canFam2|chr1 (88109338-88108633)
               

               
               7-549, gnl|dasNov1|scaffold_94 (115178-114482)
               

               
               7-549, gnl|echTel1|scaffold_160358 (8163-8849)
               

               
               7-549, gnl|hg17|chr9 (72682041-72682722)
               

               
               7-549, gnl|Hg17|chr9 (72682057-72682579)
               

               
               7-549, gnl|loxAfr1|scaffold_41547 (6532-5877)
               

               
               7-549, gnl|mm7|chr19 (20484434-20483799)
               

               
               7-549, gnl|Mm7|chr19 (20484416-20483925)
               

               
               7-549, gnl|monDom2|scaffold_17 (16409175-16408474)
               

               
               7-549, gnl|oryCun1|scaffold_208448 (5420-6056)
               

               
               7-549, gnl|panTro1|chr11 (56511556-56512238)
               

               
               7-549, gnl|rheMac2|chr15 (81592985-81593666)
               

               
               7-549, gnl|rn3|chr1 (224075021-224074382)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	7-549, gnl\|bosTau2\|chr9 (28149672-28149127)
	7-549, gnl\|canFam2\|chr1 (88109338-88108633)
	7-549, gnl\|dasNov1\|scaffold_94 (115178-114482)
	7-549, gnl\|echTel1\|scaffold_160358 (8163-8849)
	7-549, gnl\|hg17\|chr9 (72682041-72682722)
	7-549, gnl\|Hg17\|chr9 (72682057-72682579)
	7-549, gnl\|loxAfr1\|scaffold_41547 (6532-5877)
	7-549, gnl\|mm7\|chr19 (20484434-20483799)
	7-549, gnl\|Mm7\|chr19 (20484416-20483925)
	7-549, gnl\|monDom2\|scaffold_17 (16409175-16408474)
	7-549, gnl\|oryCun1\|scaffold_208448 (5420-6056)
	7-549, gnl\|panTro1\|chr11 (56511556-56512238)
	7-549, gnl\|rheMac2\|chr15 (81592985-81593666)
	7-549, gnl\|rn3\|chr1 (224075021-224074382)