Non-Coding RNA Search

rspl04_g1.y1

Sequence:


               
               AGGTATGCAAGGAGCTGGCATTCAAGGGCCAGGCAAGCAAGGTGGAGGCCAGGCTAGCAG
TTTTAGTCCTGGGCAGAGCCAAGTAACTCCACAGGATCAAGAAAAGGCAGCTTTGATCAT
GCAGGTTCTGCAACTGACAGCAGATCAAATTGCCATGCTGCCTCCTGAGCAAAGGCAGAG
TATCTTGATTTTAAAGGAGCAAATCCAGAAATCCACTGGAGCTTCTTGAAAGATTTTGAG
AACATATTTGGCAGTAATCCCAGAAAAGTTTTCTGTAATATAGAGAATGGGTGGGTGCAA
AAAGCTGACTTCTGCATCCCCTCACTTGAATGATTAGGGTTTCCTTCCTCCTGGACCCTA
ATCTCATCCCTTGTTTCTTTCTTTCTTTTTTTTTCTTTTTTCCTTTTTGTAATTGTGGGA
TAGGGGGAGGTGGGAGTGGGTCTGTTCACTTCAATTCACTGTAAATACACAAAAATAACT
AAACATGGTTATACCAATAAGATTACAAAGATTATACAGCATTATTGAAAAATGTCTACA
ATGTGTTAACTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTATGCAAGGAGCTGGCATTCAAGGGCCAGGCAAGCAAGGTGGAGGCCAGGCTAGCAG
TTTTAGTCCTGGGCAGAGCCAAGTAACTCCACAGGATCAAGAAAAGGCAGCTTTGATCAT
GCAGGTTCTGCAACTGACAGCAGATCAAATTGCCATGCTGCCTCCTGAGCAAAGGCAGAG
TATCTTGATTTTAAAGGAGCAAATCCAGAAATCCACTGGAGCTTCTTGAAAGATTTTGAG
AACATATTTGGCAGTAATCCCAGAAAAGTTTTCTGTAATATAGAGAATGGGTGGGTGCAA
AAAGCTGACTTCTGCATCCCCTCACTTGAATGATTAGGGTTTCCTTCCTCCTGGACCCTA
ATCTCATCCCTTGTTTCTTTCTTTCTTTTTTTTTCTTTTTTCCTTTTTGTAATTGTGGGA
TAGGGGGAGGTGGGAGTGGGTCTGTTCACTTCAATTCACTGTAAATACACAAAAATAACT
AAACATGGTTATACCAATAAGATTACAAAGATTATACAGCATTATTGAAAAATGTCTACA
ATGTGTTAACTACAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-200, - strand, RNAz p=0.998477
               

               
               277-394, - strand, RNAz p=0.616838

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.998477
               

               
               277-394, - strand, RNAz p=0.616838

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               81-198, AJ678279 KN224 Bos taurus cDNA clone KN224-026_A09, mRNA sequence 
(emb|AJ678279.1|), blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 692949 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB442371.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 693541 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442734.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 001004BEMN040226HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY104676.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, sh1-bjn16_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY483478.1|), blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, LB03048.CR_N09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377993.1|), 
blast E-value=9.80909e-45, identity=94.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               81-198, AJ678279 KN224 Bos taurus cDNA clone KN224-026_A09, mRNA sequence 
(emb|AJ678279.1|), blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 692949 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB442371.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 693541 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442734.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, 001004BEMN040226HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY104676.1|), 
blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, sh1-bjn16_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY483478.1|), blast E-value=9.80909e-45, identity=94.92% 
               

               
               81-198, LB03048.CR_N09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377993.1|), 
blast E-value=9.80909e-45, identity=94.92%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-555, gnl|bosTau2|chr26 (4403046-4402516)
               

               
               2-555, gnl|Hg17|chr10 (53127677-53127154)
               

               
               2-555, gnl|Mm7|chr19 (30783889-30784438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-555, gnl|bosTau2|chr26 (4403046-4402516)
               

               
               2-555, gnl|Hg17|chr10 (53127677-53127154)
               

               
               2-555, gnl|Mm7|chr19 (30783889-30784438)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	81-200, - strand, RNAz p=0.998477
	277-394, - strand, RNAz p=0.616838

	81-198, AJ678279 KN224 Bos taurus cDNA clone KN224-026_A09, mRNA sequence (emb\|AJ678279.1\|), blast E-value=9.80909e-45, identity=94.92%
	81-198, 692949 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB442371.1\|), blast E-value=9.80909e-45, identity=94.92%
	81-198, 693541 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB442734.1\|), blast E-value=9.80909e-45, identity=94.92%
	81-198, 001004BEMN040226HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY104676.1\|), blast E-value=9.80909e-45, identity=94.92%
	81-198, sh1-bjn16_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY483478.1\|), blast E-value=9.80909e-45, identity=94.92%
	81-198, LB03048.CR_N09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE377993.1\|), blast E-value=9.80909e-45, identity=94.92%

	2-555, gnl\|bosTau2\|chr26 (4403046-4402516)
	2-555, gnl\|Hg17\|chr10 (53127677-53127154)
	2-555, gnl\|Mm7\|chr19 (30783889-30784438)