rspl07_f23.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCCTATCCCAAGGGGATGTATGATGTGGTTGCCATCCCATAAGACGCTTTTTCAGAT TCAAGCAGAGCGTATCCTGAAGCTTCAGCAGTTAGCTGAAAAATATCATGGCAACAAATG TATCATTCCATGGTATATAATGACCAGTGGCAGAACAATGGACTCTACAAAGGAATTCTT CACAAAGCACAAGTACTTTGGTTTAAAAAAAGAGAATGTCATCTTTTTTCAGCAGGGAAT GCTGCCTGCTATGAGTTTTGATGGGAAAATTATTTTGGAAGAGAAGAACAAGGTTTCTAT GGCTCCAGATGGGAATGGTGGTCTTTATCGGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCCTATCCCAAGGGGATGTATGATGTGGTTGCCATCCCATAAGACGCTTTTTCAGAT TCAAGCAGAGCGTATCCTGAAGCTTCAGCAGTTAGCTGAAAAATATCATGGCAACAAATG TATCATTCCATGGTATATAATGACCAGTGGCAGAACAATGGACTCTACAAAGGAATTCTT CACAAAGCACAAGTACTTTGGTTTAAAAAAAGAGAATGTCATCTTTTTTCAGCAGGGAAT GCTGCCTGCTATGAGTTTTGATGGGAAAATTATTTTGGAAGAGAAGAACAAGGTTTCTAT GGCTCCAGATGGGAATGGTGGTCTTTATCGGGCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-117, + strand, RNAz p=0.65273 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, + strand, RNAz p=0.65273 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr3 (7274973-7275109) | |
| 1-135, gnl|canFam2|chr38 (23209952-23209719) | |
| 1-135, gnl|canFam2|chr38 (23209922-23209724) | |
| 1-135, gnl|danRer3|chr5 (25226586-25226819) | |
| 1-135, gnl|danRer3|chr5 (25226616-25226812) | |
| 1-135, gnl|dasNov1|scaffold_192825 (138-337) | |
| 1-135, gnl|dasNov1|scaffold_73190 (4014-3781) | |
| 1-135, gnl|echTel1|scaffold_123034 (304-106) | |
| 1-135, gnl|fr1|chrUn (71377724-71377945) | |
| 1-135, gnl|fr1|chrUn (71377748-71377938) | |
| 1-135, gnl|hg17|chr1 (159278201-159278434) | |
| 1-135, gnl|Hg17|chr1 (159278296-159278432) | |
| 1-135, gnl|hg17|chr17 (42800246-42800438) | |
| 1-135, gnl|loxAfr1|scaffold_10175 (5302-5069) | |
| 1-135, gnl|loxAfr1|scaffold_10175 (5272-5074) | |
| 1-135, gnl|mm7|chr1 (170138073-170137840) | |
| 1-135, gnl|mm7|chr1 (170138043-170137845) | |
| 1-135, gnl|Mm7|chr1 (170137976-170137840) | |
| 1-135, gnl|monDom2|scaffold_16 (12363909-12364134) | |
| 1-135, gnl|monDom2|scaffold_16 (12363931-12364127) | |
| 1-135, gnl|oryCun1|scaffold_144489 (1832-1599) | |
| 1-135, gnl|oryCun1|scaffold_144489 (1802-1604) | |
| 1-135, gnl|panTro1|chr1 (141437636-141437872) | |
| 1-135, gnl|panTro1|chr19 (62312992-62312800) | |
| 1-135, gnl|rheMac2|chr1 (141112731-141112964) | |
| 1-135, gnl|rheMac2|chr16 (57440428-57440620) | |
| 1-135, gnl|rn3|chr13 (85986959-85986726) | |
| 1-135, gnl|rn3|chr6 (16896721-16896919) | |
| 1-135, gnl|tetNig1|chr1_random (3066265-3066068) | |
| 1-135, gnl|tetNig1|chr1_random (3066268-3066075) | |
| 1-135, gnl|xenTro1|scaffold_74 (1207563-1207800) | |
| 1-135, gnl|xenTro1|scaffold_74 (1207586-1207793) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr3 (7274973-7275109) | |
| 1-135, gnl|canFam2|chr38 (23209952-23209719) | |
| 1-135, gnl|canFam2|chr38 (23209922-23209724) | |
| 1-135, gnl|danRer3|chr5 (25226586-25226819) | |
| 1-135, gnl|danRer3|chr5 (25226616-25226812) | |
| 1-135, gnl|dasNov1|scaffold_192825 (138-337) | |
| 1-135, gnl|dasNov1|scaffold_73190 (4014-3781) | |
| 1-135, gnl|echTel1|scaffold_123034 (304-106) | |
| 1-135, gnl|fr1|chrUn (71377724-71377945) | |
| 1-135, gnl|fr1|chrUn (71377748-71377938) | |
| 1-135, gnl|hg17|chr1 (159278201-159278434) | |
| 1-135, gnl|Hg17|chr1 (159278296-159278432) | |
| 1-135, gnl|hg17|chr17 (42800246-42800438) | |
| 1-135, gnl|loxAfr1|scaffold_10175 (5302-5069) | |
| 1-135, gnl|loxAfr1|scaffold_10175 (5272-5074) | |
| 1-135, gnl|mm7|chr1 (170138073-170137840) | |
| 1-135, gnl|mm7|chr1 (170138043-170137845) | |
| 1-135, gnl|Mm7|chr1 (170137976-170137840) | |
| 1-135, gnl|monDom2|scaffold_16 (12363909-12364134) | |
| 1-135, gnl|monDom2|scaffold_16 (12363931-12364127) | |
| 1-135, gnl|oryCun1|scaffold_144489 (1832-1599) | |
| 1-135, gnl|oryCun1|scaffold_144489 (1802-1604) | |
| 1-135, gnl|panTro1|chr1 (141437636-141437872) | |
| 1-135, gnl|panTro1|chr19 (62312992-62312800) | |
| 1-135, gnl|rheMac2|chr1 (141112731-141112964) | |
| 1-135, gnl|rheMac2|chr16 (57440428-57440620) | |
| 1-135, gnl|rn3|chr13 (85986959-85986726) | |
| 1-135, gnl|rn3|chr6 (16896721-16896919) | |
| 1-135, gnl|tetNig1|chr1_random (3066265-3066068) | |
| 1-135, gnl|tetNig1|chr1_random (3066268-3066075) | |
| 1-135, gnl|xenTro1|scaffold_74 (1207563-1207800) | |
| 1-135, gnl|xenTro1|scaffold_74 (1207586-1207793) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |