Non-Coding RNA Search

rspl14_c13.y1

Sequence:


               
               GACCATCAAGAGACCTTAGGGAGAACGGTGAGGGTGGCACTTGCAGCCCATTTCCTTCCT
CAGAACCTAAAGACCCTTCTTGTCGGCATCAACCATACCTTCCAGATATGGACAGCGGTG
CTGTGGTGAAGGGAAAGAACTCTCATGTGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCATCAAGAGACCTTAGGGAGAACGGTGAGGGTGGCACTTGCAGCCCATTTCCTTCCT
CAGAACCTAAAGACCCTTCTTGTCGGCATCAACCATACCTTCCAGATATGGACAGCGGTG
CTGTGGTGAAGGGAAAGAACTCTCATGTGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-153, - strand, RNAz p=0.991035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-153, - strand, RNAz p=0.991035

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-153, gnl|bosTau2|chr1 (42965787-42965634)
               

               
               1-153, gnl|canFam2|chr33 (32945290-32945745)
               

               
               1-153, gnl|dasNov1|scaffold_11457 (8674-9132)
               

               
               1-153, gnl|echTel1|scaffold_267112 (39734-39276)
               

               
               1-153, gnl|galGal2|chr9 (15360610-15360149)
               

               
               1-153, gnl|hg17|chr3 (198101083-198101541)
               

               
               1-153, gnl|Hg17|chr3 (198101182-198101335)
               

               
               1-153, gnl|mm7|chr16 (31664253-31663798)
               

               
               1-153, gnl|Mm7|chr16 (31664152-31663999)
               

               
               1-153, gnl|monDom2|scaffold_69 (7519502-7519996)
               

               
               1-153, gnl|oryCun1|scaffold_77508 (1411-953)
               

               
               1-153, gnl|panTro1|chr2 (202285731-202286189)
               

               
               1-153, gnl|rheMac2|chr2 (188548440-188547982)
               

               
               1-153, gnl|rn3|chr11 (70673444-70673899)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr1 (42965787-42965634)
               

               
               1-153, gnl|canFam2|chr33 (32945290-32945745)
               

               
               1-153, gnl|dasNov1|scaffold_11457 (8674-9132)
               

               
               1-153, gnl|echTel1|scaffold_267112 (39734-39276)
               

               
               1-153, gnl|galGal2|chr9 (15360610-15360149)
               

               
               1-153, gnl|hg17|chr3 (198101083-198101541)
               

               
               1-153, gnl|Hg17|chr3 (198101182-198101335)
               

               
               1-153, gnl|mm7|chr16 (31664253-31663798)
               

               
               1-153, gnl|Mm7|chr16 (31664152-31663999)
               

               
               1-153, gnl|monDom2|scaffold_69 (7519502-7519996)
               

               
               1-153, gnl|oryCun1|scaffold_77508 (1411-953)
               

               
               1-153, gnl|panTro1|chr2 (202285731-202286189)
               

               
               1-153, gnl|rheMac2|chr2 (188548440-188547982)
               

               
               1-153, gnl|rn3|chr11 (70673444-70673899)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-153, gnl\|bosTau2\|chr1 (42965787-42965634)
	1-153, gnl\|canFam2\|chr33 (32945290-32945745)
	1-153, gnl\|dasNov1\|scaffold_11457 (8674-9132)
	1-153, gnl\|echTel1\|scaffold_267112 (39734-39276)
	1-153, gnl\|galGal2\|chr9 (15360610-15360149)
	1-153, gnl\|hg17\|chr3 (198101083-198101541)
	1-153, gnl\|Hg17\|chr3 (198101182-198101335)
	1-153, gnl\|mm7\|chr16 (31664253-31663798)
	1-153, gnl\|Mm7\|chr16 (31664152-31663999)
	1-153, gnl\|monDom2\|scaffold_69 (7519502-7519996)
	1-153, gnl\|oryCun1\|scaffold_77508 (1411-953)
	1-153, gnl\|panTro1\|chr2 (202285731-202286189)
	1-153, gnl\|rheMac2\|chr2 (188548440-188547982)
	1-153, gnl\|rn3\|chr11 (70673444-70673899)