Non-Coding RNA Search

rspl17_h20.y1

Sequence:


               
               CAAAACGAGGCAGCAGAATATTAGCATGCAGCGTCAGGAAAACCTTCGCTGGGTATCAGA
ACTCTCTTATGCAGAAGAGAAAGAACAATGGCAAGAACAAATCAATCAGCTAAAGAAACA
ACTTGATTTCAGCGTCAATATTTGTCAGACCTTGATGCAAGATCAGCAGGCTCTGTCTTG
TCTGCTACAAACTCTTCTCACGGGCCCTTACAGTGTTATGCCCAGCAATGTTGCATCTCC
TCAAGTACATCTTATAATGCACCAGTTGAACCAGTGCTATACACAGCTAACATGGCAACA
GAATAATGTGCAAAGGTTGAAACAAATGCTAAATGAACTTATGTGCCAACAAAATCAACA
TCCAGAAAAACCTGGAAGCAAGGAAAGAGGCAGTAGCACATCACACCCTCCTTCTCCCAG
TTTATTTTGTCCTTTCAGCTTTCCAGCACAGCCTGTAAATCTGTTTAACCTACCGGGGTT
TACTAATTTTTCATCATTTGCACCAGGTGTGAATTTCAGTCCTTTGTTTCCTTCTAATCT
TGGAGATTTTTCTCAGAATATTTCTACACCCACTGAACAACAGCCACCATTAGTCCAGAA
TCCTTCAGGGAAAACAGAATACATGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAACGAGGCAGCAGAATATTAGCATGCAGCGTCAGGAAAACCTTCGCTGGGTATCAGA
ACTCTCTTATGCAGAAGAGAAAGAACAATGGCAAGAACAAATCAATCAGCTAAAGAAACA
ACTTGATTTCAGCGTCAATATTTGTCAGACCTTGATGCAAGATCAGCAGGCTCTGTCTTG
TCTGCTACAAACTCTTCTCACGGGCCCTTACAGTGTTATGCCCAGCAATGTTGCATCTCC
TCAAGTACATCTTATAATGCACCAGTTGAACCAGTGCTATACACAGCTAACATGGCAACA
GAATAATGTGCAAAGGTTGAAACAAATGCTAAATGAACTTATGTGCCAACAAAATCAACA
TCCAGAAAAACCTGGAAGCAAGGAAAGAGGCAGTAGCACATCACACCCTCCTTCTCCCAG
TTTATTTTGTCCTTTCAGCTTTCCAGCACAGCCTGTAAATCTGTTTAACCTACCGGGGTT
TACTAATTTTTCATCATTTGCACCAGGTGTGAATTTCAGTCCTTTGTTTCCTTCTAATCT
TGGAGATTTTTCTCAGAATATTTCTACACCCACTGAACAACAGCCACCATTAGTCCAGAA
TCCTTCAGGGAAAACAGAATACATGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55630282|ref|XP_519626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55630282|ref|XP_519626.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-196, gnl|bosTau2|chr27 (12354503-12354308)
               

               
               1-196, gnl|Hg17|chr8 (17867839-17868034)
               

               
               1-196, gnl|Mm7|chr8 (40073160-40073357)
               


               
               305-508, gnl|bosTau2|chr27 (12353198-12352995)
               

               
               305-508, gnl|Hg17|chr8 (17868758-17868961)
               

               
               305-508, gnl|Mm7|chr8 (40074049-40074250)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-196, gnl|bosTau2|chr27 (12354503-12354308)
               

               
               1-196, gnl|Hg17|chr8 (17867839-17868034)
               

               
               1-196, gnl|Mm7|chr8 (40073160-40073357)
               


               
               305-508, gnl|bosTau2|chr27 (12353198-12352995)
               

               
               305-508, gnl|Hg17|chr8 (17868758-17868961)
               

               
               305-508, gnl|Mm7|chr8 (40074049-40074250)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-196, gnl\|bosTau2\|chr27 (12354503-12354308)
	1-196, gnl\|Hg17\|chr8 (17867839-17868034)
	1-196, gnl\|Mm7\|chr8 (40073160-40073357)

	305-508, gnl\|bosTau2\|chr27 (12353198-12352995)
	305-508, gnl\|Hg17\|chr8 (17868758-17868961)
	305-508, gnl\|Mm7\|chr8 (40074049-40074250)