Non-Coding RNA Search

rspl18_j23.y1

Sequence:


               
               AAAGTCTTCCCTGCTTCTTAGCAAATCATGGTAAACATGTCAACACATTATGGGATGTGG
TACACTTTGAATATGTGAACATCTGATGAAGAGATCTTTTTGATCGGAACTTTTATGTTG
GTTCAATAGGCAGGACTAGTTATCTGCTTTGTTTACTTGTAGGTATCTGAGACAGTTATA
CACACATGCTGGGATTTAGGGTCAGCTCTCTGTGAAAAAAATGGAAGCACATTTAACGCA
TGGGCTCTTGAATCTCCTCCACCCCTCCTAGTATTTTTAAATGGGAGGTCCTGCCTCTAG
GATGGTGCCTAGATATTCTAAAATAGATACACTAAATCCAGTACAAAATGTGGTTAGATT
TTTTTTTCCCTGGGTGTTTGCAGCACATTTGTACAAGTTGTGAAAAGACTTGTTTTGCTG
AATTTTCATTAGCACATTCTTAGTGAGATAGTAACATTCAATATCACTGACAAATATATT
GGACATCTCTAGTAAAAGTTTTTCTAATTATTGGATTTGTAGATACTCAGGTGTTGGCAG
AAATTCTAAATATGGATAATTTAAAGAATCGGACTATTACTGTTATGACCCTAATATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTCTTCCCTGCTTCTTAGCAAATCATGGTAAACATGTCAACACATTATGGGATGTGG
TACACTTTGAATATGTGAACATCTGATGAAGAGATCTTTTTGATCGGAACTTTTATGTTG
GTTCAATAGGCAGGACTAGTTATCTGCTTTGTTTACTTGTAGGTATCTGAGACAGTTATA
CACACATGCTGGGATTTAGGGTCAGCTCTCTGTGAAAAAAATGGAAGCACATTTAACGCA
TGGGCTCTTGAATCTCCTCCACCCCTCCTAGTATTTTTAAATGGGAGGTCCTGCCTCTAG
GATGGTGCCTAGATATTCTAAAATAGATACACTAAATCCAGTACAAAATGTGGTTAGATT
TTTTTTTCCCTGGGTGTTTGCAGCACATTTGTACAAGTTGTGAAAAGACTTGTTTTGCTG
AATTTTCATTAGCACATTCTTAGTGAGATAGTAACATTCAATATCACTGACAAATATATT
GGACATCTCTAGTAAAAGTTTTTCTAATTATTGGATTTGTAGATACTCAGGTGTTGGCAG
AAATTCTAAATATGGATAATTTAAAGAATCGGACTATTACTGTTATGACCCTAATATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-463, - strand, RNAz p=0.725462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-463, - strand, RNAz p=0.725462

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-598, gnl|bosTau2|chr6 (52809656-52809061)
               

               
               1-598, gnl|canFam2|chr32 (7309422-7310009)
               

               
               1-598, gnl|dasNov1|scaffold_10699 (21308-20710)
               

               
               1-598, gnl|echTel1|scaffold_286487 (9631-9043)
               

               
               1-598, gnl|hg17|chr4 (81406637-81407231)
               

               
               1-598, gnl|Hg17|chr4 (81407322-81406711)
               

               
               1-598, gnl|loxAfr1|scaffold_179576 (815-1421)
               

               
               1-598, gnl|mm7|chr5 (97315821-97316364)
               

               
               1-598, gnl|Mm7|chr5 (97316716-97315892)
               

               
               1-598, gnl|monDom2|scaffold_37 (20385152-20384390)
               

               
               1-598, gnl|oryCun1|scaffold_204301 (46112-46656)
               

               
               1-598, gnl|panTro1|chr3_random (51642471-51641877)
               

               
               1-598, gnl|rheMac2|chr5 (49462055-49461463)
               

               
               1-598, gnl|rn3|chr14 (12884558-12884017)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr6 (52809656-52809061)
               

               
               1-598, gnl|canFam2|chr32 (7309422-7310009)
               

               
               1-598, gnl|dasNov1|scaffold_10699 (21308-20710)
               

               
               1-598, gnl|echTel1|scaffold_286487 (9631-9043)
               

               
               1-598, gnl|hg17|chr4 (81406637-81407231)
               

               
               1-598, gnl|Hg17|chr4 (81407322-81406711)
               

               
               1-598, gnl|loxAfr1|scaffold_179576 (815-1421)
               

               
               1-598, gnl|mm7|chr5 (97315821-97316364)
               

               
               1-598, gnl|Mm7|chr5 (97316716-97315892)
               

               
               1-598, gnl|monDom2|scaffold_37 (20385152-20384390)
               

               
               1-598, gnl|oryCun1|scaffold_204301 (46112-46656)
               

               
               1-598, gnl|panTro1|chr3_random (51642471-51641877)
               

               
               1-598, gnl|rheMac2|chr5 (49462055-49461463)
               

               
               1-598, gnl|rn3|chr14 (12884558-12884017)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-598, gnl\|bosTau2\|chr6 (52809656-52809061)
	1-598, gnl\|canFam2\|chr32 (7309422-7310009)
	1-598, gnl\|dasNov1\|scaffold_10699 (21308-20710)
	1-598, gnl\|echTel1\|scaffold_286487 (9631-9043)
	1-598, gnl\|hg17\|chr4 (81406637-81407231)
	1-598, gnl\|Hg17\|chr4 (81407322-81406711)
	1-598, gnl\|loxAfr1\|scaffold_179576 (815-1421)
	1-598, gnl\|mm7\|chr5 (97315821-97316364)
	1-598, gnl\|Mm7\|chr5 (97316716-97315892)
	1-598, gnl\|monDom2\|scaffold_37 (20385152-20384390)
	1-598, gnl\|oryCun1\|scaffold_204301 (46112-46656)
	1-598, gnl\|panTro1\|chr3_random (51642471-51641877)
	1-598, gnl\|rheMac2\|chr5 (49462055-49461463)
	1-598, gnl\|rn3\|chr14 (12884558-12884017)