Non-Coding RNA Search

rspl19_j24.y1

Sequence:


               
               AAACTCCTTCGGAATGGTTCATTTCAATAGCGTTTATCATTACACATGGTGTTCTGGTAG
TAATAGAAAAGTGCATTAGACGCTTCAGCAAATGGAAATGAAATGTAAATTTAGATTGTA
AATATAGGACTGCAGTAAATAGATAGCAAGGAAAAAAGATGAAGAGATTAGAAACTTGCC
ACATCCCTCTAACCCTAAAGGGATTGTTTCTATAAATAGTTTAAAAAGATTGAAGAAGAA
GGGGGAGGAAGAGGAGGAGAACAGAAGCAAACAGATTTTCCCCTAATCCTTTTCACTTTT
GCAAAATTGAAAATCGTCTTTCAATCAATTTCCCCCAGCAGAAGAAAGAAACCATGCCTG
CTTTCACTTACTAAAGGGCGAGTGGGTAGGTGTCTGCTGGAACTGATTCTGAGGAGGGCT
CCCTGTAGGTAATAAGACTAGCAATGTCCTGGTTGGGAGGGGAAGGGATTAAGTCCAGAA
ATAAGTCCAAATAGGTGTGCAGGAAAAAGAAGGGCTCGGAGGGCAGGATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTCCTTCGGAATGGTTCATTTCAATAGCGTTTATCATTACACATGGTGTTCTGGTAG
TAATAGAAAAGTGCATTAGACGCTTCAGCAAATGGAAATGAAATGTAAATTTAGATTGTA
AATATAGGACTGCAGTAAATAGATAGCAAGGAAAAAAGATGAAGAGATTAGAAACTTGCC
ACATCCCTCTAACCCTAAAGGGATTGTTTCTATAAATAGTTTAAAAAGATTGAAGAAGAA
GGGGGAGGAAGAGGAGGAGAACAGAAGCAAACAGATTTTCCCCTAATCCTTTTCACTTTT
GCAAAATTGAAAATCGTCTTTCAATCAATTTCCCCCAGCAGAAGAAAGAAACCATGCCTG
CTTTCACTTACTAAAGGGCGAGTGGGTAGGTGTCTGCTGGAACTGATTCTGAGGAGGGCT
CCCTGTAGGTAATAAGACTAGCAATGTCCTGGTTGGGAGGGGAAGGGATTAAGTCCAGAA
ATAAGTCCAAATAGGTGTGCAGGAAAAAGAAGGGCTCGGAGGGCAGGATTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               236-334, + strand, RNAz p=0.522497

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-334, + strand, RNAz p=0.522497

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-533, gnl|bosTau2|chr10 (14531072-14530544)
               

               
               1-533, gnl|canFam2|chr8 (5885675-5886921)
               

               
               1-533, gnl|dasNov1|scaffold_17870 (5134-3848)
               

               
               1-533, gnl|echTel1|scaffold_231648 (1598-330)
               

               
               1-533, gnl|hg17|chr14 (22019755-22021039)
               

               
               1-533, gnl|Hg17|chr14 (22020102-22020625)
               

               
               1-533, gnl|loxAfr1|scaffold_49059 (30174-31464)
               

               
               1-533, gnl|mm7|chr14 (49030535-49031793)
               

               
               1-533, gnl|Mm7|chr14 (49030869-49031389)
               

               
               1-533, gnl|monDom2|scaffold_12 (27560549-27559307)
               

               
               1-533, gnl|oryCun1|scaffold_212960 (67939-69190)
               

               
               1-533, gnl|panTro1|chr15 (20961887-20963171)
               

               
               1-533, gnl|rheMac2|chr7 (85290416-85291709)
               

               
               1-533, gnl|rn3|chr15 (32224235-32225477)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-533, gnl|bosTau2|chr10 (14531072-14530544)
               

               
               1-533, gnl|canFam2|chr8 (5885675-5886921)
               

               
               1-533, gnl|dasNov1|scaffold_17870 (5134-3848)
               

               
               1-533, gnl|echTel1|scaffold_231648 (1598-330)
               

               
               1-533, gnl|hg17|chr14 (22019755-22021039)
               

               
               1-533, gnl|Hg17|chr14 (22020102-22020625)
               

               
               1-533, gnl|loxAfr1|scaffold_49059 (30174-31464)
               

               
               1-533, gnl|mm7|chr14 (49030535-49031793)
               

               
               1-533, gnl|Mm7|chr14 (49030869-49031389)
               

               
               1-533, gnl|monDom2|scaffold_12 (27560549-27559307)
               

               
               1-533, gnl|oryCun1|scaffold_212960 (67939-69190)
               

               
               1-533, gnl|panTro1|chr15 (20961887-20963171)
               

               
               1-533, gnl|rheMac2|chr7 (85290416-85291709)
               

               
               1-533, gnl|rn3|chr15 (32224235-32225477)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-533, gnl\|bosTau2\|chr10 (14531072-14530544)
	1-533, gnl\|canFam2\|chr8 (5885675-5886921)
	1-533, gnl\|dasNov1\|scaffold_17870 (5134-3848)
	1-533, gnl\|echTel1\|scaffold_231648 (1598-330)
	1-533, gnl\|hg17\|chr14 (22019755-22021039)
	1-533, gnl\|Hg17\|chr14 (22020102-22020625)
	1-533, gnl\|loxAfr1\|scaffold_49059 (30174-31464)
	1-533, gnl\|mm7\|chr14 (49030535-49031793)
	1-533, gnl\|Mm7\|chr14 (49030869-49031389)
	1-533, gnl\|monDom2\|scaffold_12 (27560549-27559307)
	1-533, gnl\|oryCun1\|scaffold_212960 (67939-69190)
	1-533, gnl\|panTro1\|chr15 (20961887-20963171)
	1-533, gnl\|rheMac2\|chr7 (85290416-85291709)
	1-533, gnl\|rn3\|chr15 (32224235-32225477)