Non-Coding RNA Search

rspl20_o10.y1

Sequence:


               
               CAAGTCTGCATCAGACACCAGGAGAGCAACTTGGGTTGGACAAATTCAAAGCATTTAGAT
AAAAGCAGAGGCCTAGCAGGTGAGGAAGAGGCTTCGCGGGTGTCAGGTCAAATCTGGGCG
GGAGGTGGCAGAAAGGCCATCAATACAAAGATATCCTGAGACTTCGAGTTGCTGCCCGCC
TCTGGCTTCAGATTACCTGACTGAAAAAGGGAGGCTGGCCTCCCCACTTGAGATGCTGGC
GCAGAAAGCACTTCACCGGTCTGTGAGGTACCACGAGTGGCTAGAGACCTGGCCAAGTAG
CAGCAGGGCTTGGTCTTCAAGAGGGTGGGTGGTCCTGGCACCAGAGGAGCAGGGAGACCC
CTCTCCACCCCCAGCACACACACCCCTCTGCCTGGTCCATCTCCAGCCACCTGCCCCAGC
CTCCTGTGGTTCTTCTTTAGAGTGAACTTGCTCAGTGATTTGATTCTGGGTGTCCAGCAG
CCAGGCAGGCTGTTGCGAAGCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTCTGCATCAGACACCAGGAGAGCAACTTGGGTTGGACAAATTCAAAGCATTTAGAT
AAAAGCAGAGGCCTAGCAGGTGAGGAAGAGGCTTCGCGGGTGTCAGGTCAAATCTGGGCG
GGAGGTGGCAGAAAGGCCATCAATACAAAGATATCCTGAGACTTCGAGTTGCTGCCCGCC
TCTGGCTTCAGATTACCTGACTGAAAAAGGGAGGCTGGCCTCCCCACTTGAGATGCTGGC
GCAGAAAGCACTTCACCGGTCTGTGAGGTACCACGAGTGGCTAGAGACCTGGCCAAGTAG
CAGCAGGGCTTGGTCTTCAAGAGGGTGGGTGGTCCTGGCACCAGAGGAGCAGGGAGACCC
CTCTCCACCCCCAGCACACACACCCCTCTGCCTGGTCCATCTCCAGCCACCTGCCCCAGC
CTCCTGTGGTTCTTCTTTAGAGTGAACTTGCTCAGTGATTTGATTCTGGGTGTCCAGCAG
CCAGGCAGGCTGTTGCGAAGCTGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               42-195, - strand, RNAz p=0.98124
               

               
               234-352, + strand, RNAz p=0.574342

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-195, - strand, RNAz p=0.98124
               

               
               234-352, + strand, RNAz p=0.574342

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-503, gnl|bosTau2|chr29 (37841703-37842220)
               

               
               4-503, gnl|Hg17|chr11 (65135017-65134545)
               

               
               4-503, gnl|Mm7|chr19 (5587747-5588195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-503, gnl|bosTau2|chr29 (37841703-37842220)
               

               
               4-503, gnl|Hg17|chr11 (65135017-65134545)
               

               
               4-503, gnl|Mm7|chr19 (5587747-5588195)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	42-195, - strand, RNAz p=0.98124
	234-352, + strand, RNAz p=0.574342

	4-503, gnl\|bosTau2\|chr29 (37841703-37842220)
	4-503, gnl\|Hg17\|chr11 (65135017-65134545)
	4-503, gnl\|Mm7\|chr19 (5587747-5588195)