Non-Coding RNA Search

rspl22_h1.y1

Sequence:


               
               GAGAAAACCGCTGGCTTATATTGATTTTTTTTTTTTTTTTTAATTCTCCCCACTGTGACC
TCTAAAAGTTTCTGTACTCCAGGTTACGCTGTTACATTTGAAGTTCTAGTCCCTGGTAGA
GAAATATTTGTATTGCTCTAGGCATTTTCTTAGATTTGGAAAGTAAAATAAACGAAGGCT
TTTTGGGGGGGGGGTTTGCCTCTGGGGTCAGACCTGGCATATCAAAGTTTAATGGATAAG
AAATCTGATCAAGTATCAATGCAGTCTTATCACCAGAACTGTTAGATTCATTAGAGCTTG
ATGTAGGTCAGTAATTGGCAATGTCATGTGGTACCTTAGTCACAAGGAGTCGTAGGGTTC
CAGCAGAGACAGTGAAGAAAATATAGGTTGGGAGTTGGCATAACTGGGATTCAGTCTTTC
CTTTACTACAAACTAATCTTGGACCTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAAACCGCTGGCTTATATTGATTTTTTTTTTTTTTTTTAATTCTCCCCACTGTGACC
TCTAAAAGTTTCTGTACTCCAGGTTACGCTGTTACATTTGAAGTTCTAGTCCCTGGTAGA
GAAATATTTGTATTGCTCTAGGCATTTTCTTAGATTTGGAAAGTAAAATAAACGAAGGCT
TTTTGGGGGGGGGGTTTGCCTCTGGGGTCAGACCTGGCATATCAAAGTTTAATGGATAAG
AAATCTGATCAAGTATCAATGCAGTCTTATCACCAGAACTGTTAGATTCATTAGAGCTTG
ATGTAGGTCAGTAATTGGCAATGTCATGTGGTACCTTAGTCACAAGGAGTCGTAGGGTTC
CAGCAGAGACAGTGAAGAAAATATAGGTTGGGAGTTGGCATAACTGGGATTCAGTCTTTC
CTTTACTACAAACTAATCTTGGACCTCACT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               43-448, gnl|bosTau2|chr2 (85384602-85384998)
               

               
               43-448, gnl|canFam2|chr2 (80901838-80901350)
               

               
               43-448, gnl|echTel1|scaffold_276274 (21110-21509)
               

               
               43-448, gnl|hg17|chr1 (21063634-21064127)
               

               
               43-448, gnl|Hg17|chr1 (21064208-21063822)
               

               
               43-448, gnl|loxAfr1|scaffold_650 (69161-68703)
               

               
               43-448, gnl|oryCun1|scaffold_214404 (159982-160439)
               

               
               43-448, gnl|panTro1|chr1 (21387111-21387606)
               

               
               43-448, gnl|rheMac2|chr1 (23653097-23653607)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-448, gnl|bosTau2|chr2 (85384602-85384998)
               

               
               43-448, gnl|canFam2|chr2 (80901838-80901350)
               

               
               43-448, gnl|echTel1|scaffold_276274 (21110-21509)
               

               
               43-448, gnl|hg17|chr1 (21063634-21064127)
               

               
               43-448, gnl|Hg17|chr1 (21064208-21063822)
               

               
               43-448, gnl|loxAfr1|scaffold_650 (69161-68703)
               

               
               43-448, gnl|oryCun1|scaffold_214404 (159982-160439)
               

               
               43-448, gnl|panTro1|chr1 (21387111-21387606)
               

               
               43-448, gnl|rheMac2|chr1 (23653097-23653607)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	43-448, gnl\|bosTau2\|chr2 (85384602-85384998)
	43-448, gnl\|canFam2\|chr2 (80901838-80901350)
	43-448, gnl\|echTel1\|scaffold_276274 (21110-21509)
	43-448, gnl\|hg17\|chr1 (21063634-21064127)
	43-448, gnl\|Hg17\|chr1 (21064208-21063822)
	43-448, gnl\|loxAfr1\|scaffold_650 (69161-68703)
	43-448, gnl\|oryCun1\|scaffold_214404 (159982-160439)
	43-448, gnl\|panTro1\|chr1 (21387111-21387606)
	43-448, gnl\|rheMac2\|chr1 (23653097-23653607)