Non-Coding RNA Search

rspl22_l14.y1

Sequence:


               
               GTTGAAAAATCACTAGCCTATAGTAACCACACCTCTGTTTGAAAACCAGTTTTTAAAGTA
TTCCCTGACAGTTTCTTTGATATGGAGCCATAAGGAAGGAACCCATTATATAATTCCTTT
TTATCTGGGAATCAGGGAATAGTCCTCAAATATATAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAAAATCACTAGCCTATAGTAACCACACCTCTGTTTGAAAACCAGTTTTTAAAGTA
TTCCCTGACAGTTTCTTTGATATGGAGCCATAAGGAAGGAACCCATTATATAATTCCTTT
TTATCTGGGAATCAGGGAATAGTCCTCAAATATATAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-159, - strand, RNAz p=0.991612

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-159, - strand, RNAz p=0.991612

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-159, gnl|bosTau2|chr19 (5455729-5455885)
               

               
               6-159, gnl|canFam2|chr9 (38062929-38062779)
               

               
               6-159, gnl|dasNov1|scaffold_2780 (4352-4493)
               

               
               6-159, gnl|galGal2|chr19 (7032150-7031985)
               

               
               6-159, gnl|hg17|chr17 (57376237-57376379)
               

               
               6-159, gnl|Hg17|chr17 (57376402-57376250)
               

               
               6-159, gnl|loxAfr1|scaffold_101728 (1134-1282)
               

               
               6-159, gnl|mm7|chr11 (86338491-86338630)
               

               
               6-159, gnl|Mm7|chr11 (86338653-86338504)
               

               
               6-159, gnl|monDom2|scaffold_56 (2180637-2180809)
               

               
               6-159, gnl|oryCun1|scaffold_211744 (3620-3476)
               

               
               6-159, gnl|panTro1|chr19 (47762843-47762701)
               

               
               6-159, gnl|rheMac2|chr16 (44540032-44539890)
               

               
               6-159, gnl|rn3|chr10 (74510788-74510925)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-159, gnl|bosTau2|chr19 (5455729-5455885)
               

               
               6-159, gnl|canFam2|chr9 (38062929-38062779)
               

               
               6-159, gnl|dasNov1|scaffold_2780 (4352-4493)
               

               
               6-159, gnl|galGal2|chr19 (7032150-7031985)
               

               
               6-159, gnl|hg17|chr17 (57376237-57376379)
               

               
               6-159, gnl|Hg17|chr17 (57376402-57376250)
               

               
               6-159, gnl|loxAfr1|scaffold_101728 (1134-1282)
               

               
               6-159, gnl|mm7|chr11 (86338491-86338630)
               

               
               6-159, gnl|Mm7|chr11 (86338653-86338504)
               

               
               6-159, gnl|monDom2|scaffold_56 (2180637-2180809)
               

               
               6-159, gnl|oryCun1|scaffold_211744 (3620-3476)
               

               
               6-159, gnl|panTro1|chr19 (47762843-47762701)
               

               
               6-159, gnl|rheMac2|chr16 (44540032-44539890)
               

               
               6-159, gnl|rn3|chr10 (74510788-74510925)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	6-159, gnl\|bosTau2\|chr19 (5455729-5455885)
	6-159, gnl\|canFam2\|chr9 (38062929-38062779)
	6-159, gnl\|dasNov1\|scaffold_2780 (4352-4493)
	6-159, gnl\|galGal2\|chr19 (7032150-7031985)
	6-159, gnl\|hg17\|chr17 (57376237-57376379)
	6-159, gnl\|Hg17\|chr17 (57376402-57376250)
	6-159, gnl\|loxAfr1\|scaffold_101728 (1134-1282)
	6-159, gnl\|mm7\|chr11 (86338491-86338630)
	6-159, gnl\|Mm7\|chr11 (86338653-86338504)
	6-159, gnl\|monDom2\|scaffold_56 (2180637-2180809)
	6-159, gnl\|oryCun1\|scaffold_211744 (3620-3476)
	6-159, gnl\|panTro1\|chr19 (47762843-47762701)
	6-159, gnl\|rheMac2\|chr16 (44540032-44539890)
	6-159, gnl\|rn3\|chr10 (74510788-74510925)